Report for 5338.m00135

 > 5338.m00135, length: 907, copies: 1 

MDPVSVAAVGWAISTAGWIISPIVAKLVNSVCPRITLNVPKKIRDLETCTLPRLALTLGALEISQRHELEKLVKE

LKSAFYQVEDILDDAEYCRLEKQLARSKKRKFPLDFNDVGSSYQADGTKLTAGYSRCRLKDKLDKIEKLIEKAQD

IIKLANLPGNNNESGDHRRYVGVTAKHTSKPTAAYLPRKVIGRDKDREEIISMLRDENQSSADRCFSVIGIHGIP

GSGKTTLAQYVCEYEEEANHFDIVMWIHVSQNFGLDTILREMIEQATKQPCPQFKSLTALQKRLKQDLCEKRFLL

VLDDVEHNKDISEDDLSALEVGGAGSKILATSRTRDALLALGAVRSKCIPISKLDEHVFRELFLQYALDGAEICE

RDRIVLQMIGADIAKKLKGSPLAARTVGGQLRIRQDVEFWRSVRDKDFFSDAMEALRWSYQLLDEKVRRCFAYCS

IFPRGHHLGRSKLINLWAAEGFISREEVGGDYFHKLVATSFLQLERKDSSGEEYYLLHDLLQDLAETVGRSDCCR

IEGGCTGQVPRDDVRHLYIKACNGATVAGNKAFEKMITENIVKLKELRTLIIDGGETGIEAKVFDDIFDSLKSLR

VLIVETQSRRILQIPESIGYLKYLRYLSIEYRCRIFFPRTVTKLYHLRVLDFGEYGMLERSCSPENMSNLVNLQR

VVGRSLGDFPNIGRLTLLRTLPTFRVKRDLLGYDIKQLKHLNKLQGKLVISGLQHVRSEEEAVEAKLAEKEHLKQ

LTLAWDDDNTSSNHDPAVLECLCPPMGLQVLEIIGYRGSYPGWMVGKHSGQLYLQKLELRQCSPLGPAPRLFECF

VHLESLCLSHLSWHTLPDNMEQVRTLKVLMISHCKNMKVLPTLPQSLSRFKLSNCGHEFTRSCKQNGENWEKIQH

ILEKIIL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	173	478	1.2e-32
NB-ARC [Pfam fs]	218	478	1.2e-34

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	13	880	1e-71
RPM1 [A. thaliana]	70	866	1e-26
Xa1 [Oryza sativa]	112	880	2e-75
M [L. usitatissimum]	160	604	9e-14
RPS2 [A. thaliana]	188	474	1e-17
Pib [Oryza sativa].	189	653	4e-23
Pi-ta [Oryza sativa]	189	651	1e-12
Mla1 [Hordeum vulgare].	193	706	4e-25

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	133	157

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5338.m00135

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)