Report for 5350.m00121

 > 5350.m00121, length: 347, copies: 1 

MDQIPIQILNGTSLYVSLDLSNNLLTGYISFNKFSGEIPSSLGQCVSLLSLDLKHNMLNGSIPQLLGQLKSIVLL

DLSQNMFVGQIPEFLVNFSFLNQLDLSNNYFEGPIPTGGIFQSSSAVILDGNTRLCSSSSYSIFGFPICPTTTLA

KRKNNAHLLIIVIPPVTIVVLSFFFFMVTLLKGKQAHTTSCYKETMKKVSYVDILKATNWFSPVNKISSSHTGSI

YIGSFLTECEVLRNTRHRNLVKAITVCSTVDLENNEFKAIVLEFMANGSLDMWVHPKLHQNSPKREYGMGYKIST

GCDVYSFGVLLLEMLTGMRPTDAMFIDGISLHKFVSMETFTSTCIFL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	47	70	0.96
LRR [Pfam ls]	71	94	6.9
Ser/Thr pkinase [Pfam fs]	230	275	0.0016
Ser/Thr pkinase [Pfam fs]	294	333	8.3e-05

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	14	35	7.1
LRR [sensitive, ls]	14	35	140
LRR [sensitive, ls]	47	70	0.048
LRR [sensitive, ls]	47	70	0.96
LRR [sensitive, ls]	71	94	0.34
LRR [sensitive, ls]	71	94	6.9
LRR [sensitive, ls]	95	116	1.2
LRR [sensitive, ls]	95	116	25

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	3	299	6e-51
Xa21 [O. sativa]	3	112	6e-11
CLV2 [A. thaliana]	4	112	4e-11
FLS2 [A.thaliana]	4	126	1e-10
CLV2 [A. thaliana]	10	127	5e-12
FLS2 [A.thaliana]	18	280	2e-27
Cf-9 [L. pimpinellifolium]	20	130	3e-14

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	158	180	in -> out

Report for 5350.m00121

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)