Report for 5386.m00145

 > 5386.m00145, length: 1807, copies: 1 

MDSTVSTARWVVGKALGPVSDGLVEAWAASRELGPNVDALKMELLYAQGVLDNAQGKDIRSPALKELLQKLRDLA

FDADDVLDELDYFRIQDELDGTYHAADEHAGGCARNLFLNVTHTAKAASKRLGFSKCSCAAAADNGSHTYPRSEQ

GAQGRGLCCGWSYNDHDSEEEEEATGGGIRKLASGARNTIHAVGKRLHCSSFPAVVDDDSSVSICCGACMHKPPQ

QRKDVIKETPKLKIDRVGLSIRMKDVVDQLQLVCAKVTTILNLEIHHSIRSTDSSTASNRPITTPTSIEPKLYGR

DDTAKSIIDYITQGTDCGKDLTVLPIVGPGGIGKTTLIQYIYKSLEVQNHFQVKVWICVSQNFSVDKLIEEIKQY

VPKVDGEKDGRPEELIEQRLKSKRFLLILDDIWKCQSDDWKKLLLPLTKGQTKGNIILVTTRFPVVAEMVKTMDN

SVDLEGLDPGAFRDLFLAYVFGDKLPRDVHKDLLVIGDKIAGKLKGSPLAAKTVGRLLRNHFDQYHWNRVLESRE

WEMETSNHDIMPALQLSYDYLPFHLQQCFFYCALFPEDYKFDTKELTCFWIGLDILHSEYQNKTNDDIALNNLND

LVSHGFFKKDETDGHPCYIIHDLLHNLAAKVASRECVSLHYSNVRSVEIWPSIRHLSINTDGVDDSDGMNNESFR

NILQKLKTRVKVENLQTVMIFGELDESFAESFHDLFKEASALRVLHLPKMSFPVGFIFNKFSTLVHLRYIRLGAP

RRSKTHLTSALSRFYHLRILDLEAWDGCLDLPRDFSNLSKLCHFLTKHDKLHFAICDVGKLQFLQELERFEVNKE

EKSFELKQLGHLMELRRLGIYNLERIDTKEAAAEAKLFDKNHLLKLALSWDKCQASRYPDKEDQVLENLRPCNNL

KELFIIEHGGSTCPSWLGAELSVKSLETLHLSNVTWKNLPPIGEVCLVNGLGEDQFVSCNTGQSFQNLKRLELVG

LPNLRKWTAKEVPMFSLIEVLIVKNCNEVIELPFSYCTYCPSEGYENLFPRLREVEIENCPQLRMPPMPYTQTLC

FVYIKDVGTRLKKLHYMSTYSLRIVGKTDLNGLDDKILAFYNLTQLQELMINNCPPLAGCYLQMLTSLKILRLDS

SSVVFHLSESLSDYKWQVPVEYLSISSYHGSGKALSQLLSHLPKLSELYLMNCNKITRMCIAVEQQQTTAVELED

TQAVESIQQQQVAEDLVEEEGVVPQLAMDQEDDDGMLIFPAHLSNSLQQLILYRCPELILDVARPALPTSHEDET

GGWGLQSLRSLQRLRACLLQARQILARAATKHALQITKCPKFLSAYEAPGCPFPSSLQCLKIAGCKEGVQTLDFI

SNLNFLTELHIDDCGEDLRCEGLWPLLTQGQLSELDVFGTPRFFAGLDPILGGLQDGQEQQLPPPLQCSSKLQEL

RTDDFAGVLVKPICLLLSSSLTELRLGWNDEVERFMKEQEEALQLLTSLRDLQFLRCSKLQCLPAGLHRLTSLKR

LKIIGCPSIRSLPKGGLPSSLQELDVGYCNNEKLKQRTSQSIHALFPNMWISCDILYLYIDLLMPFQSYVAIRLL

TGVLGFVAQVFLYLDLIIGLQDRCGRNTSLETNNVAVTCLKYASTALKVNSVAINRPDSCHRLNRCTGVFGTPRF

FAGLDPILGGLQDGQEQQLSPLQCSSKLQELHTDDFAGVHVKPICRLLSSSLTKLVLGWNDEVERFTKEQEEALQ

LLISLQDLHFWGCTNLQCLPAGLHRLTSLKRLEIIGCPSIRSLPKGGLPSSLQELDVRASWNEKFKQRCRKLKGT

IPEIILD

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	280	586	1.7e-55
NB-ARC [Pfam ls]	280	586	1.7e-55
LRR [Pfam ls]	1729	1752	5

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	1095	1119	6.5
LRR [sensitive, ls]	1095	1119	130
LRR [sensitive, ls]	1331	1354	5.9
LRR [sensitive, ls]	1331	1354	120
LRR [sensitive, ls]	1381	1405	5.6
LRR [sensitive, ls]	1381	1405	110
LRR [sensitive, ls]	1473	1496	3
LRR [sensitive, ls]	1473	1496	62
LRR [sensitive, ls]	1497	1518	1.4
LRR [sensitive, ls]	1497	1518	28
LRR [sensitive, ls]	1729	1752	0.25
LRR [sensitive, ls]	1729	1752	5
LRR [sensitive, ls]	1753	1774	0.8
LRR [sensitive, ls]	1753	1774	16

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa1 [Oryza sativa]	9	1801	1e-149
Mla1 [Hordeum vulgare].	243	945	2e-24
RPS2 [A. thaliana]	258	1009	7e-27
I2 [L. esculentum]	278	1391	1e-81
Pib [Oryza sativa].	292	791	3e-21
Pi-ta [Oryza sativa]	292	774	3e-17
RPM1 [A. thaliana]	323	1032	3e-35
Xa1 [Oryza sativa]	939	1536	4e-26

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5386.m00145

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)