Report for 5392.m00139

 > 5392.m00139, length: 938, copies: 2 

MAALFLLLLLHVSDAAINPGDLSVLHDLRRSLTNADAVLGWGDPNAADPCAAWPHISCDRAGRVNNIDLKNAGLA

GTLPSTFAALDALQDLSLQNNNLSGDLPSFRGMASLRHAFLNNNSFRSIPADFFSGLTSLLVISLDQNPLNVSSG

GWTIPADVAAAQQLQSLSLNGCNLTGAIPDFLGAMNSLQELKLAYNALSGPIPSTFNASGLQTLWLNNQHGVPKL

SGTLDLIATMPNLEQAWLHGNDFSGPIPDSIADCKRLSDLCLNSNQLVGLVPPALESMAGLKSVQLDNNNLLGPV

PAIKAPKYTYSQNGFCADKPGVACSPQVMALLHFLAEVDYPKRLVASWSGNNSCVDWLGISCVAGNVTMLNLPEY

GLNGTISDSLGNLSELSDINLIGNNLTGHVPDSLTSLRLLQKLDLSGNDLTGPLPTFSPSVKVNVTGNLNFNGTA

PGSAPSKDTPGSSSSRAPTLPGQGVLPENKKKRSAVVLATTIPVAVSVVALASVCAVLIFRKKRGSVPPNAASVV

VHPRENSDPDNLVKIVMVNNDGNSSSTQGNTLSGSSSRASDVHMIDTGNFVIAVQVLRGATKNFTQDNVLGRGGF

GVVYKGELHDGTMIAVKRMEAAVISNKALDEFQAEITILTKVRHRNLVSILGYSIEGNERLLVYEYMSNGALSKH

LFQWKQFELEPLSWKKRLNIALDVARGMEYLHNLAHQCYIHRDLKSANILLGDDFRAKVSDFGLVKHAPDGNFSV

ATRLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELITGMTAIDESRLEEETRYLASWFCQIRKDEDRLRAAID

PTLDQSDETFESISVIAELAGHCTSREPTQRPDMGHAVNVLVPMVEKWKPVNDETEDYMGIDLHQPLLQMVKGWQ

DAEASMTDGSILSLEDSKGSIPARPAGFAESFTSADGR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	87	109	0.055
LRR [Pfam ls]	110	133	0.029
LRR [Pfam ls]	163	186	0.046
LRR [Pfam ls]	187	210	2.4
LRR [Pfam ls]	414	436	1.9
Ser/Thr pkinase [Pfam fs]	589	795	9.4e-54
Ser/Thr pkinase [Pfam ls]	589	868	1.2e-51

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	63	86	6.4
LRR [sensitive, ls]	63	86	130
LRR [sensitive, ls]	87	109	0.0027
LRR [sensitive, ls]	87	109	0.055
LRR [sensitive, ls]	110	133	0.0015
LRR [sensitive, ls]	110	133	0.029
LRR [sensitive, ls]	134	162	4.7
LRR [sensitive, ls]	134	162	94
LRR [sensitive, ls]	163	186	0.0023
LRR [sensitive, ls]	163	186	0.046
LRR [sensitive, ls]	187	210	0.12
LRR [sensitive, ls]	187	210	2.4
LRR [sensitive, ls]	237	260	0.58
LRR [sensitive, ls]	237	260	12
LRR [sensitive, ls]	261	284	0.74
LRR [sensitive, ls]	261	284	15
LRR [sensitive, ls]	285	307	1.5
LRR [sensitive, ls]	285	307	30
LRR [sensitive, ls]	366	389	5.9
LRR [sensitive, ls]	366	389	120
LRR [sensitive, ls]	390	413	0.64
LRR [sensitive, ls]	390	413	13
LRR [sensitive, ls]	414	436	0.096
LRR [sensitive, ls]	414	436	1.9

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Cf-9 [L. pimpinellifolium]	6	453	1e-17
Xa21 [O. sativa]	13	301	6e-19
Xa21 [O. sativa]	20	453	2e-29
CLV2 [A. thaliana]	25	451	7e-24
FLS2 [A.thaliana]	53	430	3e-23
FLS2 [A.thaliana]	56	456	3e-26
Cf-9 [L. pimpinellifolium]	63	447	1e-27
Cf-9 [L. pimpinellifolium]	63	432	4e-24
CLV2 [A. thaliana]	64	432	1e-16
FLS2 [A.thaliana]	64	869	2e-66
CLV2 [A. thaliana]	67	427	1e-18
FLS2 [A.thaliana]	67	457	1e-25
FLS2 [A.thaliana]	74	453	1e-24
Xa21 [O. sativa]	74	701	1e-36
CLV2 [A. thaliana]	134	430	6e-14
Pto [L. esculentum]	547	860	2e-49
Rpg1 [Hordeum vulgare]	575	872	5e-23
Rpg1 [Hordeum vulgare]	578	890	2e-31

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5392.m00139

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)