Report for 5395.m00174

 > 5395.m00174, length: 1885, copies: 2 

MEEVEAGWLEGGIRWLAETILDNLDADKLDEWIRQIRLAADTEKLRAEIEKVDGVVAAVKGRAIGNRSLARSLGR

LRGLLYDADDAVDELDYFRLQQQVEGGVTTRFEAEETVGDGAEDEDDIPMDNTDVPEAVAAGSSKKRSKAWEHFT

TVEFTADGKDSKARCKYCHKDLCCTSKNGTSALRNHLNVCKRKRVTSTDQPVNPSRLRYIADLSNRLTTITCSSS

AGEGASNATGNSVGRKRMRMDGTSTHHEAVSTHPWNKAELSNRIQCMTHQLEEAVNEVMRLCRSSSSNQSRQGTP

PATNATTSSYLPEPIVYGRAAEMETIKQLIMSNRSNGITVLPIVGNGGIGKTTLAQLVCKDLVIKSQFNVKIWVY

VSDKFDVVKITRQILDHVSNQSHEGISNLDTLQQDLEEQMKSKKFLIVLDDVWEIRTDDWKKLLAPLRPNDQVNS

SQEEATGNMIILTTRIQSIAKSLGTVQSIKLEALKDDDIWSLFKVHAFGNDKHDSSPGLQVLGKQIASELKGNPL

AAKTVGSLLGTNLTIDHWDSIIKSEEWKSLQQAYGIMQALKLCYDHLSNPLQQCVSYCSLFPKGYSFSKAQLIQI

WIAQGFVEESSEKLEQKGWKYLAELVNSGFLQQVESTRFSSEYFVVHDLMHDLAQKVSQTEYATIDGSECTELAP

SIRHLSIVTDSAYRKEKYRNISRNEVFEKRLMKVKSRSKLRSLVLIGQYDSHFFKYFKDAFKEAQHLRLLQITAT

YADSDSFLSSLVNSTHLRYLKIVTEESGRTLPRSLRKYYHLQVLDIGYRFGIPRISNDINNLLSLRHLVAYDEVC

SSIANIGKMTSLQELGNFIVQNNLSGFEVTQLKSMNKLVQLSVSQLENVRTQEEACGAKLKDKQHLEKLHLSWKD

AWNGYDSDESYEDEYGSDMNIETEGEELSVGDANGAQSLQHHSNISSELASSEVLEGLEPHHGLKYLRISGYNGS

TSPTWLPSSLTCLQTLHLEKCGKWQILPLERLGLLVKLVLIKMRNATELSIPSLEELVLIALPSLNTCSCTSIRN

LNSSLKVLKIKNCPVLKVFPLFEICQKFEIERTSSWLPHLSKLTIYNCPLSCVHSSLPPSSIVSKLSIGKVSTLP

TVRGSSSGTLIIGLHPDEVDDDDGLEDSDQLKTLDDKVLLFHNLRFLTSLAIYGCRNLATISIESLRQLVCLKSL

ELYGCPKLFSSDVPPELTCEYMSGANHSALPSLECLYIEDCGITGKWLSLMLQHVQALQELSLEDCQQITRLSIG

EEENSQPNLMSAMEDPSLGYPDRDELLRLPLNLISSLKKVSITYCYDLTFYGSKVDFAGFTSLEELVISRCPKLV

SFLAHNDGNDEQSNGRWLLPLSLGKLEINYVDSLKTLQLCFPGNLTRLKKLVVLGNQSLTSLQLHSCTALQELII

RSCESLNSLEGLQLLGNLRLLCAHRCLSGHEEDGMCILPQSLEEIYICEYSQERLQLCFPGSLTRLKKLVVLGNQ

SLTSLQLHSCTALQELIIQSCESLNSLEGLQWLGNLRLLQAHRCLSGYGENGRCILPQSLEELYIREYSQETLQP

CFPGNLTSLKKLEVQGSQKLISLQLYSCTALQELMIESCVSLNSLEGLQWLVNLRLLRAHRCLSGYGENGRCILP

QSLEGLYIREYSQEILQPCFQTNLTCLKRLEVSGTGSFKSLELQSCTALEHLKIEGCSSLATLEGLRFLHTLRHL

KVHRCPRLPPYFESLSGQGYELCPRLERLEINYPSILTTSFCKNLTSLQYLELCNHGLEMERLTDEEERALQLLT

SLQELRFNCCYNLVDLPTGLHNLPSLKRLEIWNCGSIARPLEKGLPPSLEELAIVDCSNELAQQCRLLASKRKCA

LKNCSHMQFS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	300	612	1.3e-65
NB-ARC [Pfam fs]	302	612	3.5e-65
LRR [Pfam ls]	1408	1432	8.1
LRR [Pfam ls]	1501	1525	8.1
LRR [Pfam ls]	1801	1824	1.3

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	790	813	4.6
LRR [sensitive, ls]	790	813	94
LRR [sensitive, ls]	1054	1076	5
LRR [sensitive, ls]	1054	1076	100
LRR [sensitive, ls]	1089	1108	1
LRR [sensitive, ls]	1089	1108	21
LRR [sensitive, ls]	1171	1195	0.84
LRR [sensitive, ls]	1171	1195	17
LRR [sensitive, ls]	1196	1218	0.93
LRR [sensitive, ls]	1196	1218	19
LRR [sensitive, ls]	1257	1281	3
LRR [sensitive, ls]	1257	1281	60
LRR [sensitive, ls]	1408	1432	0.4
LRR [sensitive, ls]	1408	1432	8.1
LRR [sensitive, ls]	1501	1525	0.4
LRR [sensitive, ls]	1501	1525	8.1
LRR [sensitive, ls]	1594	1618	1.7
LRR [sensitive, ls]	1594	1618	35
LRR [sensitive, ls]	1676	1697	6.2
LRR [sensitive, ls]	1676	1697	120
LRR [sensitive, ls]	1698	1720	1.6
LRR [sensitive, ls]	1698	1720	32
LRR [sensitive, ls]	1801	1824	0.064
LRR [sensitive, ls]	1801	1824	1.3
LRR [sensitive, ls]	1825	1853	2.6
LRR [sensitive, ls]	1825	1853	52

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa1 [Oryza sativa]	1	1873	0
Pi-ta [Oryza sativa]	210	868	3e-26
RPS2 [A. thaliana]	271	1088	6e-31
I2 [L. esculentum]	303	1505	2e-88
N [N. glutinosa]	309	657	6e-15
Pib [Oryza sativa].	313	796	3e-28
RPM1 [A. thaliana]	340	899	4e-34
Mla1 [Hordeum vulgare].	343	863	5e-31
I2 [L. esculentum]	977	1620	2e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
BED zinc finger	143	191	1.8e-19

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	263	283
putative coiled-coil	1784	1806

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5395.m00174

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)