Report for 5395.m00178

 > 5395.m00178, length: 1821, copies: 2 

MEEVEVGLLEGGIGWLVQTILENLDTDKLGEWIRQVGLTDDTEKLRSEIERVEVVTAAVKGRAIGNRSLARSLSR

LRELLYDADDAIDELDYYRLQQQVQGDAWQGGTGSLDEPEAEQAERPSINAAIAISSGSKKRSKAWGHFDITEEE

NGKPVKARCIHCHTVVKCGSEKGTSVLHNHLKSGSCNKKREATDQQPNPSSSTADTAANSTLVELGGSGSDIRKK

MRINGESTHNDAPYAHPWKKAECSTRIQQITRELQDARGAVSEILKLHGPCSVGNSNHRTSTTTTLCRRTSSLNP

HKIYGRDAEKNTIMKIITDDSYDGVTVVPIVGIGGVGKTALAQLVYNEPTVKRDFERIWVWVSDNYDELRITMEI

LDFVSQERHEESPCRKEIRKGVSSFAKLQEILNGYMDIQSKKFLLVLDDVWDSMDDYRWNILLDPLKSNHPKGNM

ILVTTRLLSLAQRIGTVKPIELGALSKEDFWLYFKTCTFGDENYKAHPSLNIIGQKIADKLKGNPLAAKATALLL

REKLTVDHWSNILMNEDWKSLHFSRGIMPALKLSYDQLPYHLQQCLLYCSIFPSSYRFVSKELICIWISQGFVHC

NSSSKRLEEIGWDYLTDLVNSGFFQKVDHTHYIMCGLMHDFARMVSRTEYATIDNLQSNKILPTIRHLSILNNSA

HYEDPSNDKVEGRIRNAVKAMKHLRTLVLIGKHSSLFFQSFKDVVQKGHHLRLLQISETCTYVDPLLCNLVNPAH

IRYMKLHKRALPQSFSKFYHLQVLDVGSKSDLIIPNGVDDLVSLQHLVAAEKACSSITSISKMTSLQELHNFGVQ

NSSGWEIAQLQSMNQLVQLGVSQLENVTTRAEACGAKLRDKQNLEKLRLSWTNLHKLGHLGTNVPWDERENARAV

LEGLEPHTNLKHLEIYSYNGATPPTWLATSLTSLQTLRLECCGQWKMIPSLERLPFLKKMKLESMQKIIEMTVPS

LEELMLIDMPNLERCSCTSMRDLNCSLRVLKVKKCPVLKVFPLFEDCQKFEIERKSWLSHLSKLTIHDCPHLHVH

NPLPPSTIVLELSIAKVSTLPTLKGSSNGTLTIWLPNDDDVPDKLITLDDNIMSFHNLSFLTGLEIYGFQNPTSI

SFHGLRQLRCLKTLKIYDCPKLLPSNVPSELTGEYMSGENHSALPSLVRLHIEKCGIMRKWLSLLLQHVQALQEL

SLDNCKQITGLSLGQEENNQPNLMSAMEDPSLGYPGEDKLMRLPLNLLSSLKKVSITLCNDITFYGSKEDFAGFT

SLEELVISRCLKLVSFLAHNDGNDEQSNGRWLLPLSLGKLEIKHVDSLKTLQLCFPGNLTRLKTLVVLGNQSLTS

LQLHSCTALQELIIQRCESLNSLEGLQLLGNLRGLLAHRCLSGHGEDGRCILPQSLEKLYIWEYSQERLQLCFPG

NLTRQKILGVLGSQSLTSLQLHSCTALQELMIRSCESLNSLEGLQWLGNLRVLRAHRCLSGYGEYGRCTLPQSLE

ELYIHEYSQETLQPCFSGNLTLLRKLQVKGNSNLVSLQLHSCTSLQELIIESCKSINSLEGLQSLGNLRLLRAFR

CLSGYGEYGRCILPQSLEELFISEYSLETLQPCFLTNLTCLKQLEVSGTTSLKSLELQSCTALEHLKIQGCASLA

TLEGLQFLHALRHMEVFRCPGLPPYLGSSSEQGYELCPRLERLDIDDPSILTTSFCKHLTSLQRLELNYRGSEVA

RLTDEQERALQLLLSLQELRFKSCYDLVDLPAGLHSLPSLKRLEIWWCRSIARLPEMGLPPSLEELVIVDCSDEL

AHQCRTLASKLNVKINGEYVN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	286	376	8.6e-12
NB-ARC [Pfam ls]	286	603	1.3e-48
NB-ARC [Pfam fs]	413	603	2.2e-37
LRR [Pfam ls]	1591	1614	7.8

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	868	890	1.1
LRR [sensitive, ls]	868	890	22
LRR [sensitive, ls]	1001	1023	5.3
LRR [sensitive, ls]	1001	1023	110
LRR [sensitive, ls]	1056	1077	7.1
LRR [sensitive, ls]	1056	1077	140
LRR [sensitive, ls]	1135	1157	4.8
LRR [sensitive, ls]	1135	1157	96
LRR [sensitive, ls]	1196	1220	2
LRR [sensitive, ls]	1196	1220	41
LRR [sensitive, ls]	1347	1371	1.3
LRR [sensitive, ls]	1347	1371	26
LRR [sensitive, ls]	1440	1464	0.62
LRR [sensitive, ls]	1440	1464	13
LRR [sensitive, ls]	1533	1557	0.61
LRR [sensitive, ls]	1533	1557	12
LRR [sensitive, ls]	1591	1614	0.39
LRR [sensitive, ls]	1591	1614	7.8
LRR [sensitive, ls]	1615	1636	5.6
LRR [sensitive, ls]	1615	1636	110
LRR [sensitive, ls]	1637	1659	1.5
LRR [sensitive, ls]	1637	1659	30
LRR [sensitive, ls]	1740	1763	0.48
LRR [sensitive, ls]	1740	1763	9.7
LRR [sensitive, ls]	1764	1785	5.6
LRR [sensitive, ls]	1764	1785	110

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa1 [Oryza sativa]	1	1821	0
RPS2 [A. thaliana]	266	1020	1e-21
I2 [L. esculentum]	278	1363	9e-83
RPM1 [A. thaliana]	301	846	3e-30
Pib [Oryza sativa].	302	964	3e-25
Pi-ta [Oryza sativa]	302	834	2e-22
Mla1 [Hordeum vulgare].	303	782	3e-24
I2 [L. esculentum]	831	1696	1e-10

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
BED zinc finger	138	187	7.8e-10

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5395.m00178

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)