Report for 5396.m00156

 > 5396.m00156, length: 607, copies: 1 

MRHCWGGASSVLRLLLALQCGVVVVVLQCSANALGSDVSALIAFKRAIIEDPRSALADWSDADGNACDWHGVICS

SPQGSVISLKLSNSSLKGFIAPELGQLSFLQELYLDRNMLFGTIPKQLGSLRNLRVLDLGVNRLTGPIPPELAGL

SSGFPVSGASLLLKLRLLSFICCRNFHSNGLTGNIPSELGKLQNLVQLRSTAHNGLCPSPRLNVGDFSYNFLVGK

IPPCLKYLPRSSFQGNCLQDEYSVRQRAFQICISGSPAGQRGGVKGFKHPTSDHKHERSPQPTWLLILEISTGIL

LLVFVITGAITASRSCKLKPSIRISSWNRSKSWSDEITVLIDSDMLKSLPKLSRQELEVACEDFSNIIGSSPETV

VYKGTMKDGPEVSVISLCAFEGHWTSQHELFYQNKVIDLARLNHENIAKFLGYCRESDPFSRMLVFEYASNGTLF

EHLHSDGEGAQLSWLRRMKIAIGIAQGLRYLHTELQPPFAISELNSNSVYVTEDFTPKLVDFECWKMMFTKQKHE

KAPGRINNKSSFPGHLDSSEDKQADIQGNTFAFGVILLEIISGRLPYCKDKGYLIDWVRHSTLSLSHCDKEAIKY

LQQTEEI

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	104	127	1.6
LRR [Pfam ls]	128	151	0.054
Ser/Thr pkinase [Pfam ls]	362	607	3e-07
Ser/Thr pkinase [Pfam fs]	414	482	2.5e-12

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	80	103	0.82
LRR [sensitive, ls]	80	103	16
LRR [sensitive, ls]	104	127	0.078
LRR [sensitive, ls]	104	127	1.6
LRR [sensitive, ls]	128	151	0.0027
LRR [sensitive, ls]	128	151	0.054
LRR [sensitive, ls]	164	193	5.6
LRR [sensitive, ls]	164	193	110

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
CLV2 [A. thaliana]	37	237	3e-16
FLS2 [A.thaliana]	37	227	1e-18
Xa21 [O. sativa]	37	227	2e-19
Xa21 [O. sativa]	67	456	3e-11
FLS2 [A.thaliana]	71	571	1e-32
FLS2 [A.thaliana]	83	227	9e-11
Pto [L. esculentum]	355	569	3e-16
Rpg1 [Hordeum vulgare]	365	574	5e-13
Rpg1 [Hordeum vulgare]	366	572	1e-18

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	289	311	in -> out

Report for 5396.m00156

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)