Report for 5403.m00182

 > 5403.m00182, length: 1099, copies: 1 

MARCGGERMVDELRDVLDDFAFRAKRLAAPLLQPFGRASEAVALDGAEIDGLRRIRAALRAAEERVVTDDFVRLW

LRELEDLERMAEDVLEELEFEALRASRLERFKLQLLRSSAGKRKRELSSLFSSSPDRLNRKIGKIMERYNDLARD

RDALRLRSSDEERRREPSPLTPTSCLTKCSLHGRERDKKQVIKLLLSDEYNCQGVYSVVPIVGAAGVGKTSLVQH

IYNDEALRSKFDMKMWVWVCQEFDVLKLTRKLAEEATESPCGFAEMNQLHRIIAKRLEGKRFLLVLDDVWDESLL

RWTSLLVPLKSAAPGSRIVVTTRSAKVARMMAFKIHQLGYLTDTTCWSVCRNAALQDRDPSIIDDGLISIGKSVA

AKCKGLPLAANAAGSVLSIAIDRKHWETVEQSDLWANNEVIDHTLPALLVSYNSLQKPLKHCFSYCSLFPKEYVF

RKDKLVRLWLAQGFAAADGESDAEDIACRYFHNLVERFFLQQSPSYDHNEQRSFRNFHNTDYTNRYVMHDLYHEL

AEYVAADEYSRIERFTLSNVNGEARHLSLTPSETHSHEIGEFHASNNKYMNESQYPGLRTLLVVQRTKHDDGRKT

SSIQKPSVLFKAFVCLRALDLSNTDMEGLPNSIGELIHLRYLSLENTKIKCLPESISSLFKLHTMNLKCCNYLSE

LPQGIKFLANLRHLELPRIDNWNVYMPCGISELTNLQTMHTIKFTSDSGSCGIADLVNLDNLRGELCISGIENVS

KEQIATEAIMKNKGELRKLVLQWSHNDSMFANDASSVLDSLQPHPALEELIIMGFFGVKFPVWMGSQCSFKLSFL

ELKDCRNCKELPSLGLLPCLKHLFINSLTSIKHVRRMLSSGDHTSSGDFQSRIAFPTLETLKFTDMESWEHWDET

EATDFPCLRHLTILNCSKLTGLPKLLALVDLRIKNCECLLDLPSFPSLQCIKMEGFCRVNHLLQLPLFSQLEMLE

LRCHKKLVSLRKLQHISPFHSLRLRKELVQKVSGCEVLPFQNPSVQDSQKTWTFLRCAGQILECNVVACTDLTFG

QTNVHSSEEEIGNGVIFHIGQDEAVELVSCKPVWVQIGQPEEVEIICID

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	165	470	7.6e-67
NB-ARC [Pfam ls]	165	470	2.3e-67
LRR [Pfam ls]	615	637	4.5
LRR [Pfam ls]	638	660	0.7

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	419	442	6.2
LRR [sensitive, ls]	419	442	130
LRR [sensitive, ls]	615	637	0.22
LRR [sensitive, ls]	615	637	4.5
LRR [sensitive, ls]	638	660	0.035
LRR [sensitive, ls]	638	660	0.7
LRR [sensitive, ls]	661	684	2.4
LRR [sensitive, ls]	661	684	49
LRR [sensitive, ls]	821	843	0.8
LRR [sensitive, ls]	821	843	16
LRR [sensitive, ls]	907	929	2
LRR [sensitive, ls]	907	929	41

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	52	941	1e-115
Mla1 [Hordeum vulgare].	52	738	2e-30
RPM1 [A. thaliana]	68	714	1e-48
Pi-ta [Oryza sativa]	69	665	4e-25
RPS2 [A. thaliana]	96	923	6e-36
Xa1 [Oryza sativa]	119	916	3e-74
Pib [Oryza sativa].	142	693	1e-30

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	72	99

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5403.m00182

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)