Report for 5414.m00237

 > 5414.m00237, length: 1078, copies: 2 

MERLHTSRNHVYGFIIILLLLVQATAAATSRCPAQQAAALLRLKRSFHHHHQPLLLPSWRAATDCCLWEGVSCDA

ASGVVVTALDLGGHGVHSPGGLDGAALFQLTSLRRLSLAGNDFGGAGLPASGLEGLAELTHLNLSNAGFAGQIPI

GVGSLRELVSLDLSSMPLSFKQPSFRAVMANLTKLRELRLDGVDMSAAAAAAAGDWCDVLAESAPKLQLLTLQSC

KLSGAIRSSFSRLGSLAVIDLSYNQGFSDASGEPFALSGEIPGFFAELSSLAILNLSNNGFNGSFPQGVFHLERL

RVLDVSSNTNLSGSLPEFPAAGEASLEVLDLSETNFSGQIPGSIGNLKRLKMLDISGSNGRFSGALPDSISELTS

LSFLDLSSSGFQLGELPASIGRMRSLSTLRLSECAISGEIPSSVGNLTRLRELDLSQNNLTGPITSINRKGAFLN

LEILQLCCNSLSGPVPAFLFSLPRLEFISLMSNNLAGPLQEFDNPSPSLTSVYLNYNQLNGSIPRSFFQLMGLQT

LDLSRNGLSGEVQLSYIWRLTNLSNLCLSANRLTVIADDEHIYNSSSSASLLQLNSLGLACCNMTKIPAILRSVV

VNDLDLSCNQLDGPIPDWIWANQNENIDVFKFNLSRNRFTNMELPLANASVYYLDLSFNYLQGPLPVPSSPQFLD

YSNNLFSSIPENLMSRLSSSFFLNLANNSLQGGIPPIICNASDLKFLDLSYNHFSGRVPPCLLDGHLTILKLRQN

KFEGTLPDDTKGGCVSQTIDLNGNQLGGKLPRSLTNCNDLEILDVGNNNFVDSFPSWTGELPKLRVLVLRSNKFF

GAVGGIPVDNGDRNRTQFSSLQIIDLASNNFSGSLQPQWFDSLKAMMVTREGDVRKALENNLSGKFYRDTVVVTY

KGAATTFIRVLIAFTMIDFSDNAFTGNIPESIGRLTSLRGLNLSHNAFTGTIPSQLSGLAQLESLDLSLNQLSGE

IPEVLVSLTSVGWLNLSYNRLEGAIPQGGQFQTFGSSSFEGNAALCGKPLSIRCNGSNAGPPSLEHSESWEARTE

TIVLYISVGSGFGLGFAMAFLFQVFRGK

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	107	132	0.72
LRR [Pfam ls]	216	239	2.8
LRR [Pfam ls]	275	298	2.3
LRR [Pfam ls]	299	322	0.87
LRR [Pfam ls]	325	348	0.057
LRR [Pfam ls]	400	423	0.21
LRR [Pfam ls]	424	443	7
LRR [Pfam ls]	450	473	1.1
LRR [Pfam ls]	498	521	3.4
LRR [Pfam ls]	522	546	0.79
LRR [Pfam ls]	718	738	6.3
LRR [Pfam ls]	789	812	7.1
LRR [Pfam ls]	845	869	0.03
LRR [Pfam ls]	937	960	0.011
LRR [Pfam ls]	961	984	0.18

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	107	132	0.036
LRR [sensitive, ls]	107	132	0.72
LRR [sensitive, ls]	133	156	0.56
LRR [sensitive, ls]	133	156	11
LRR [sensitive, ls]	157	183	3.2
LRR [sensitive, ls]	157	183	64
LRR [sensitive, ls]	216	239	0.14
LRR [sensitive, ls]	216	239	2.8
LRR [sensitive, ls]	240	274	0.85
LRR [sensitive, ls]	240	274	17
LRR [sensitive, ls]	275	298	0.11
LRR [sensitive, ls]	275	298	2.3
LRR [sensitive, ls]	299	322	0.043
LRR [sensitive, ls]	299	322	0.87
LRR [sensitive, ls]	325	348	0.0028
LRR [sensitive, ls]	325	348	0.057
LRR [sensitive, ls]	349	374	1.3
LRR [sensitive, ls]	349	374	27
LRR [sensitive, ls]	375	399	0.48
LRR [sensitive, ls]	375	399	9.7
LRR [sensitive, ls]	400	423	0.01
LRR [sensitive, ls]	400	423	0.21
LRR [sensitive, ls]	424	443	0.34
LRR [sensitive, ls]	424	443	7
LRR [sensitive, ls]	450	473	0.053
LRR [sensitive, ls]	450	473	1.1
LRR [sensitive, ls]	474	496	4.1
LRR [sensitive, ls]	474	496	82
LRR [sensitive, ls]	498	521	0.17
LRR [sensitive, ls]	498	521	3.4
LRR [sensitive, ls]	522	546	0.039
LRR [sensitive, ls]	522	546	0.79
LRR [sensitive, ls]	547	567	3.7
LRR [sensitive, ls]	547	567	74
LRR [sensitive, ls]	578	597	2.4
LRR [sensitive, ls]	578	597	49
LRR [sensitive, ls]	600	623	1.6
LRR [sensitive, ls]	600	623	32
LRR [sensitive, ls]	650	669	1.8
LRR [sensitive, ls]	650	669	37
LRR [sensitive, ls]	670	693	0.65
LRR [sensitive, ls]	670	693	13
LRR [sensitive, ls]	694	717	1.7
LRR [sensitive, ls]	694	717	35
LRR [sensitive, ls]	718	738	0.31
LRR [sensitive, ls]	718	738	6.3
LRR [sensitive, ls]	741	761	1.3
LRR [sensitive, ls]	741	761	26
LRR [sensitive, ls]	765	788	2.7
LRR [sensitive, ls]	765	788	54
LRR [sensitive, ls]	789	812	0.35
LRR [sensitive, ls]	789	812	7.1
LRR [sensitive, ls]	813	840	2.4
LRR [sensitive, ls]	813	840	48
LRR [sensitive, ls]	845	869	0.0015
LRR [sensitive, ls]	845	869	0.03
LRR [sensitive, ls]	913	936	0.78
LRR [sensitive, ls]	913	936	16
LRR [sensitive, ls]	937	960	0.00057
LRR [sensitive, ls]	937	960	0.011
LRR [sensitive, ls]	961	984	0.009
LRR [sensitive, ls]	961	984	0.18
LRR [sensitive, ls]	985	1007	0.97
LRR [sensitive, ls]	985	1007	20

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
CLV2 [A. thaliana]	35	731	2e-46
Xa21 [O. sativa]	56	625	3e-36
FLS2 [A.thaliana]	66	862	1e-62
Xa21 [O. sativa]	95	466	6e-26
Cf-9 [L. pimpinellifolium]	106	558	4e-25
CLV2 [A. thaliana]	111	448	1e-17
Xa21 [O. sativa]	137	734	9e-39
CLV2 [A. thaliana]	144	758	9e-45
FLS2 [A.thaliana]	205	1033	3e-76
Cf-9 [L. pimpinellifolium]	329	1068	4e-92
Xa21 [O. sativa]	329	860	5e-44
CLV2 [A. thaliana]	351	1058	6e-54
Xa21 [O. sativa]	404	1022	4e-45
Xa21 [O. sativa]	474	1001	4e-33
CLV2 [A. thaliana]	494	978	1e-35
CLV2 [A. thaliana]	591	1001	2e-27

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	12	34	in -> out
putative TM domain	1053	1075	out -> in

Report for 5414.m00237

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)