Report for 5420.m00114

 > 5420.m00114, length: 822, copies: 1 

MSPPHLLLLLLALLLSPPLLLASSSFPLPTIAIAAVSNSSSNPSKQHLACGLVPAAGGAAAGYRISCASVSNRSA

AAPHVYAYGGDGTCSPYSAVVAGDGYLCSAAPTSSPPMSMRWWDLNEAGDGSKRVYRGRVLSAVSGGGESVCGLV

GERMQCWRCPWGEGAPARVGFSAVAVGGGFVCGLVVGSGEVRCYGGGEVVGREPAGRRFMLLAAGERHACGVDDG

GVVGCWGEAAAVAAASPPRISRAVSTVAVGDAVTCVLWGNWTVSCWPEGEASPPPALAGQQFVALEAKGKVVCGV

LMSDYSLQCWGAGVAGGVRKVFDKVLPGPCAPSKSCSCGVWSGSAQLCAGSGGGGGGDVSVCYPCGYTPPPMALS

PTSNSSSSSSSQSKGKRRPSNLAIALISAGAGSALVALLAALAAVYYLRRHRGSSSPVSGRIHAEPTGTAPRVER

RLSALLSKGPNTTVEQFPLVALRAATDCFSPAKRIGSGSFGAVYRASLPDGREVAIKRAERRDTGGPSSSSAAAA

RRVDHEAAFVSELALLSRVNHKNLVRLLGFCADGGERILVYEFMPNGTLHDHLHRRAASAAAPLSPPLASWPSRL

RLALGAARGIEYMHTYAVPPIIHRDIKSSNILLDSCWTAKVSDFGLSLLNTLDGDNAAAGDGGNAGDGDDEERCV

TAGTVGYMDPEYYRLQHLTDKSDVYSFGVVLLELLSGCKAIQKYEGSGSPKNVVDMAVPHIEGDRVHRVLDARLP

LPTPWEMEAVAYVGYLAADCVRLAGRDRPTMSEVVGVLERAVAACDEYEEGGAGAGGEPALSRSCTDGSTAT

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
Ser/Thr pkinase [Pfam fs]	479	717	5.5e-44
Ser/Thr pkinase [Pfam ls]	479	785	2.7e-40

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Rpg1 [Hordeum vulgare]	457	788	3e-27
FLS2 [A.thaliana]	464	800	1e-32
Pto [L. esculentum]	466	792	9e-45
Rpg1 [Hordeum vulgare]	466	790	3e-16

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	6	28	out -> in
putative TM domain	397	419	in -> out

Report for 5420.m00114

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)