Report for 5426.m00135

 > 5426.m00135, length: 928, copies: 1 

MEFAIDNIFRPLRNLFTRTVGYIRALESEARWLKSQRDDVMKEVRLAERQGMEATNQVSHWLEAVASLLVRAIGI

VAEFPRGGAAAGGLGLRAAYRLSKRADEARAEAVSLVEQRSTFQKVADAPVFACTEVLPTAAPSIGLDALLARVA

NAFQEGGTSVIGIYGAPGVGKTTLLHHFNNTFLSASAASMDIHLVIYVEVTERYSAGAVQKAIGGRLGLRWEDGK

STKEKALALCTYLHRWNFVLLLDDVWEPLNLAELGVPVPGRHGKSKVLLTTRLEHVCDQMDVTRKIKVECLSAAD

SWELFKNKVGNAFVTSREIQPLAQAMASRCGGLPLGLITVARAMACKRVTREWEHSMAVLNLAPWQLDGVEANLL

VSLKRSYDSLRDDSLRICLLYCSLFSGETSKELLVESFIGEGFVSDVSADDMDDLYNKGHYMLGILVTSSLLEAA

GDYHVTMHPMVRAMALWVVADCGRIDNKWLVRAGLVTSAAPRADKWTGAERVSLMRTGINELNDAPTCSVLKTLL

LQSNRLLGRICHDFFSFMPCLRLLDLSDTLITALPSEINLLVTLQYLRLNNTTIRSLPAGIGALVNLRFLLLSNV

PVQTIAAGVLNPLTALQVLCMDHCWSSWMDVGSCEPESGDSRKRRRHDLRQRVNLRELESLKSLQMLDISVQTLH

SLEKLSQSPHLAEHLRNLHVQDCSDLPSIQFSPSSLWRHMSRLKGIIISGCCNLENVIITGGEYKGEQPWSLDRT

VSMMRYRVPDKPLDVDSVYRPQTSQSLDMDCRKLVPLLPSLQSIILRKLPKAKIVWQGGSLEYLSSLSISSCSVL

EHLISYDTEGLSHGSPAETVFPSLKELELHDLPNMRSIGPESIAVNFPSLASLKVVRCSRLKKLNLVAGCLKELQ

CTQTWWNKLVWEDENLKTVFLSSVKPLA

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	122	424	9.8e-57
NB-ARC [Pfam fs]	160	424	1.1e-56
LRR [Pfam ls]	545	567	0.45
LRR [Pfam ls]	568	590	1
LRR [Pfam ls]	591	614	1.5

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	520	544	1.2
LRR [sensitive, ls]	520	544	24
LRR [sensitive, ls]	545	567	0.022
LRR [sensitive, ls]	545	567	0.45
LRR [sensitive, ls]	568	590	0.049
LRR [sensitive, ls]	568	590	1
LRR [sensitive, ls]	591	614	0.077
LRR [sensitive, ls]	591	614	1.5
LRR [sensitive, ls]	663	684	3.9
LRR [sensitive, ls]	663	684	78
LRR [sensitive, ls]	689	712	2.9
LRR [sensitive, ls]	689	712	58
LRR [sensitive, ls]	813	837	2.1
LRR [sensitive, ls]	813	837	42
LRR [sensitive, ls]	848	872	1.2
LRR [sensitive, ls]	848	872	24

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPS2 [A. thaliana]	23	926	1e-107
N [N. glutinosa]	140	482	8e-11
RPM1 [A. thaliana]	140	609	4e-21
I2 [L. esculentum]	142	927	2e-15
Xa1 [Oryza sativa]	154	695	9e-21
Mla1 [Hordeum vulgare].	161	737	1e-13

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5426.m00135

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)