Report for 5430.m00143

 > 5430.m00143, length: 1079, copies: 1 

MALAFAGKSVAVSAISMIVRKSFDYLEKYAKAEGMKSVQERLERTLPQVQVVFDAIDMERIRDQSEALDAWLWQL

RDAVEEAEDVLDEVEYYKLEKKVKTRGNKVSSSLYKCKRVVVQQFNSTFKAGTFKRLLDAIRKLDEIVVGVERFV

LLVDRLDSCTSRHVCHQEVSNPRETSSFSVDEIVIGRDTERVKIVEWLIEQDNVHDHDVCAVNAFSIVGIGGMGK

TTLAQAIYNDQRVKQCFDQAMWICVSNDFDVPALMKKIIQEITREGTNVTNFNTLQEIVRENLKSKKFLLVFDDV

WNDERRPDWEKLVAPLKFGQKGSKILLTTRMESVVDIVERVLGGRTKSLRLEGLHDKDLLAIFNRHAFFEVNPDD

YFNLQEIGKKITRKLSGCPLAAKIMGGLLNNSLDSIYWNRMLRENISNIEHNSEGIMKILRLSYHHLAPHLQACF

RYCGMFREDYWFRKDELINFWMGSGLIQLSANENQRPEDIGEFYLGILTKKSFFELQLNKSTNLYEGYDLHEVNV

PPKCGFIASELMDLKDLRYLCIRCLENVNADEATLAKLGEKENLIMLSLTWKNSQQESDTEERVLNNLQPHMNLT

KLKIKGYNGSRSPCWLGNTTIINLTYLYISNCSYWQHLPPLGELPSLKYLYLICLNSVKRIDSSFYGCERPFGFP

SLEYLFIEHLPALEEWVEMEGEHLFPRLKALVVRHCKELRNVPTLPSTVNYLEMDSVGLTTLHEPYVPNENAEPQ

KPSLSRLKICHCPYLETLEQLNQFLSLEELHIEHCENLVQLPMDHLQMLSFLKHMTVLGCPKLMVPPATIRLPLP

TKKLHVGSCGTYETCLVNSLCGLTSLTTLMLYGCDIAALPPVEVCKSLIALSCLEIVSCHELADLNGMEELTSLT

ELKVIGCNKLEELPVVSSQRFQASEHNQVVTACTSYLRKLKRLQISDPFVLQWAPLRSVTSVTNMTINSCRCLPE

EWLMQNCNNLQRIGVRDASHLEFLPSIMASLTSLESLEFTRVMLIQSLPELPSSLRRLQILGCNPVLMRRCRKSR

GRDWHKIAHIPDLRIVEDIPSSYSWNSYL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	168	482	1.9e-57
NB-ARC [Pfam ls]	168	482	1.6e-57
LRR [Pfam ls]	776	800	5.6
LRR [Pfam ls]	850	871	1.4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	623	645	0.78
LRR [sensitive, ls]	623	645	16
LRR [sensitive, ls]	753	775	4.3
LRR [sensitive, ls]	753	775	87
LRR [sensitive, ls]	776	800	0.28
LRR [sensitive, ls]	776	800	5.6
LRR [sensitive, ls]	850	871	0.069
LRR [sensitive, ls]	850	871	1.4
LRR [sensitive, ls]	898	922	3.5
LRR [sensitive, ls]	898	922	71
LRR [sensitive, ls]	1008	1031	3.7
LRR [sensitive, ls]	1008	1031	75

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	1	1038	1e-68
Mla1 [Hordeum vulgare].	10	485	1e-21
RPM1 [A. thaliana]	76	630	1e-29
L6 [L. usitatissimum]	112	1066	1e-18
Pib [Oryza sativa].	151	475	3e-22
N [N. glutinosa]	154	914	2e-21
RPP5 [A. thaliana]	168	1039	2e-13
M [L. usitatissimum]	173	404	1e-12
Xa1 [Oryza sativa]	175	518	2e-51
RPS2 [A. thaliana]	184	970	4e-21
Pi-ta [Oryza sativa]	184	505	2e-21
Xa1 [Oryza sativa]	530	1053	2e-19
I2 [L. esculentum]	550	1065	4e-32
Xa1 [Oryza sativa]	623	1047	4e-17

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5430.m00143

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)