Report for 5434.m00199

 > 5434.m00199, length: 1167, copies: 1 

MRMDGTSTLHEAVSTHPWNRGELSNMIQHMTHQLQEAVNGVMRLCGYASLNQRCESTPLAPNAITSSYPLEPKMY

GRDAEMESIKNLIMGNKSNDITVLPIVGIGGIGKTTLSQHVYNDPEIGNQFEIKIWVHVSDKFDVVRITREILGC

VSNRSYQGISNFNMLQQDLEKHMKSKKFLIVLDDVWDVTTEDCWNKLLGPLRPNHVNASEVTGNMIIVTTRILTV

AQRCGTAGSINLEALEDGDIWSLFKAYAFSTDQHGSNQNLENLGRKTIKELKGNPLAAKTVGSLLRRNLTEDHWI

NIIENKEWQSLKHTDGIMHVLKFSYDYLPNQLQQSFSYCSLFPKGYSFSKAQLIKIWIAQGFVEKSSEKFEHKGW

EYLTELVNSGFFQQAESWWSSSVVFVMHDLMHDLARLVSQTECATIDGSECRELAPSIRHLSIVTNSAYCKYQNG

KLSRNEEFEKSLMKVMSRSKLRTLVLIGQYNHHFFKSFQDAFREAQHLRLLHITAAYADLDSFLSSLANTTHLRY

LRFKNKESHGAFHLLLERVTHEALPHALSKCYHLQVLDIGSYGSPLIPDDINNLVSLRHLAQKGVCSSIASIGEM

ASLQKLTNFKVENSIGFEITQLQCMSEPVEPGVSRLENVTTQQEASGASLKSNHCLEGLHLFWKGVRNGYDSDGN

RYDSGGSSENECDGNMISEPSMHSETEGERLQMSDSNGAPSLDHILDIASEELEGLEPHHNLKYLRISWYNGTKA

PTWLSTSLTYLQTLRLENCAEWHTLSLEGLSLLRKLVLIEMKNASVLSIRSPQDIILIGMQNLHTCSCTSMVDFN

SSLRILKIKRCPVLKVFPLFENCRNLGCSWLPHLSNLTIDDCPDFTVPHPFPPSTTVSEFFINGISTLPTMRSNE

GIFYIRSNSFSDKLTAMDKTVLPYHNLSRFVTTLHISQCRNLRYISLEGLRQLIHLKRLKIDECQNLFSSDVPQE

PTSTREDMVAGIGNRNDRPSLELVSITECGITGKWLSQILQHVQGVQELTLRNCLAVTRLSMGEEEKCQLELLLD

LEASSSRHPSDASISSAEDGLLRIPLNLVSSLKKIHCSCSDKSRNFSLSSVHTGKNDDQASVHDYSLQTALPCFI

GKPVRLKKLLVQNNASLECLQLQCLHGHLKSWRFENVHSSPK

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	58	368	3.2e-69
NB-ARC [Pfam ls]	58	368	8.9e-70

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa1 [Oryza sativa]	1	1147	0
RPS2 [A. thaliana]	32	366	1e-26
I2 [L. esculentum]	36	1165	3e-76
RPM1 [A. thaliana]	71	417	6e-34
Pib [Oryza sativa].	71	585	8e-34
Pi-ta [Oryza sativa]	73	577	3e-21
Mla1 [Hordeum vulgare].	74	615	3e-29
N [N. glutinosa]	76	345	8e-14

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5434.m00199

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)