Report for 5450.m00146

 > 5450.m00146, length: 759, copies: 1 

MEMLQSVINIREAVSTMINFGEASKLEKDLSCLPVSLDKARAVIYRGEWGRFKNKDLAALLWHLKDATYDAEDLL

RESNDQVLWQKMEDADRSLAGQFFSSSLNVVQTLIGGSKTRIKEVQDKLNKAVADLEGELNSVGLNFEIVQHMPV

TSSVIGVPQVFGHDEERDLVIEKLGVMIGRDNERDLVIEKMGVPLTRFVAARAKGKRAAGGTVAKSASTPKRLKG

ESSRAGPRISQSKCIGNVSILPIFGIGGVGKTTLAQYIYNDERVRSHFRMRTWVCVSDLFDKKRIIEEIFKSITK

KDSSQHSSNDLQEELKKKLKSQKFLLVLDDIWSITNREWEELNALLKDGLKGSMILVTTRLQNVANLVCTNNFEP

FELKGLDEDKFWNFFKDCAFGQKRPADSECNNLHKIGQSIASRLCGSPLAAKTLGRLLNMELTSLVKLVSGERTR

PEDIGIRYLDDLRSRFLLQIDPKYPDESRYVMHDLIHDMAQSVSVNECLLLQDLSSRNEGRKLHAVRHMSVQVAD

ESLKSELRDIQYLNKLHSLRLGINLKVEITWFNQLSNILFMSLQGCKLVKLPESIGELHSLRYLDISHSCVKELP

EKFWRLYSLQVVDARRSSLRAISPDVTKLINLRRLALPTNCALKLSVLTRLGNLSRLRNLKYFTVAPRNGRKIGE

LKDMDKLSGTLTIKSICNVKSKEEASEARLVDKQYLKTLDLWWRDSDGYNVMSSENGVLEGLCPPRRIECLKVEN

FRGDSFCSS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	223	492	2.6e-18
NB-ARC [Pfam fs]	241	433	9.3e-39
LRR [Pfam ls]	585	607	1

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	562	584	0.76
LRR [sensitive, ls]	562	584	15
LRR [sensitive, ls]	585	607	0.052
LRR [sensitive, ls]	585	607	1
LRR [sensitive, ls]	608	631	2.1
LRR [sensitive, ls]	608	631	42

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	28	756	1e-49
RPM1 [A. thaliana]	226	635	1e-30
N [N. glutinosa]	240	662	1e-12
Pib [Oryza sativa].	243	433	4e-11
Xa1 [Oryza sativa]	243	438	7e-34
Mla1 [Hordeum vulgare].	248	749	2e-14
Xa1 [Oryza sativa]	452	725	2e-17

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	114	136

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5450.m00146

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)