Report for 5462.m00113

 > 5462.m00113, length: 1135, copies: 1 

MHFLLLLLHLLSFSSSTAASASSEVAFLTQWLNTTAARPPDWSPSASSPCKWSHVGCDAATGSVTSVTFQSVHLA

APLPPGICAALPSLASLVVSDANLTGGVPDDLHLCRRLAVLDLSGNSLSGPIPASLGNATAMASLALNSNQLSGP

IPASLGNLAASLRDLLLFDNRLSGELPASLGELRLLESLRAGGNRDLGGEIPESFSRLSNLVVLGLADTKISGAL

PASLGRLQSLQTLSIYTTMLSGSIPAELAGCGNLTNVYLYENSLSGPLPPSLGALPRLQKLLLWQNSLTGPIPDT

FGNLTSLVSLDLSINAISGAIPASLGRLPALQDLMLSDNNLTGTIPPALANATSLVQLQLDTNAISGLIPPELGR

LAALQVVFAWQNQLEGSIPASLAGLANLQALDLSHNHLTGAIPPGIFLLRNLTKLLLLSNDLSGVIPPEIGKAAS

LVRLRLGGNRLAGTIPAAVAGMRSINFLDLGSNRLAGGVPAELGNCSQLQMLDLSNNTLTGALPESLAGVRGLQE

IDVSHNQLTGGVPDAFGRLEALSRLVLSGNSLSGAIPAALGKCRNLELLDLSDNALSGRIPDELCAIDGLDIALN

LSRNGLTGPIPARISALSKLSVLDLSYNALDGGLAPLAGLDNLVTLNVSNNNFTGYLPDTKLFRQLSTSCLAGNS

GLCTKGGDVCFVSIDASGRPVMSADEEEVQRMHRLKLAIALLVTATVAMVLGMVGILRARGMGIVGGKGGHGGGS

SDSESGGDLAWPWQFTPFQKLSFSVEQVVRNLVDANIIGKGCSGVVYRVGLDTGEVIAVKKLWPSTRNGADKDDV

AGGGRVRDSFSAEVRTLGCIRHKNIVRFLGCCWNKTTRLLMYDYMANGSLGAVLHERRHGGHGGGGAQLEWDVRY

RIVLGAAQGLAYLHHDCVPPIVHRDIKANNILIGLDFEAYIADFGLAKLVDDGDFGRSSNTVAGSYGYIAPEYGY

MMKITEKSDVYSYGVVVLEVLTGKQPIDPTIPDGQHVVDWVRRRKGAADVLDPALRGRSDAEVDEMLQVMGVALL

CVAPSPDDRPAMKDVAAMLNEIRLDRDDYANVDLLLKSGAAAASPPRAAAAATSTSSSTPPSSSSFSGSSAMIYN

SSSKAKSPFD

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	112	135	0.028
LRR [Pfam ls]	161	184	1.3
LRR [Pfam ls]	258	281	0.64
LRR [Pfam ls]	282	305	0.042
LRR [Pfam ls]	306	329	0.34
LRR [Pfam ls]	330	353	0.024
LRR [Pfam ls]	402	425	0.0047
LRR [Pfam ls]	450	473	0.97
LRR [Pfam ls]	474	497	7
LRR [Pfam ls]	498	521	0.057
LRR [Pfam ls]	522	545	0.03
LRR [Pfam ls]	546	569	2.7
LRR [Pfam ls]	570	593	0.12
LRR [Pfam ls]	619	641	0.51
LRR [Pfam ls]	642	664	0.42
Ser/Thr pkinase [Pfam fs]	782	1001	3.2e-44
Ser/Thr pkinase [Pfam ls]	782	1069	5.4e-40

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	88	111	1
LRR [sensitive, ls]	88	111	21
LRR [sensitive, ls]	112	135	0.0014
LRR [sensitive, ls]	112	135	0.028
LRR [sensitive, ls]	136	159	1.6
LRR [sensitive, ls]	136	159	33
LRR [sensitive, ls]	161	184	0.065
LRR [sensitive, ls]	161	184	1.3
LRR [sensitive, ls]	185	209	0.67
LRR [sensitive, ls]	185	209	14
LRR [sensitive, ls]	210	233	0.48
LRR [sensitive, ls]	210	233	9.6
LRR [sensitive, ls]	234	257	0.53
LRR [sensitive, ls]	234	257	11
LRR [sensitive, ls]	258	281	0.032
LRR [sensitive, ls]	258	281	0.64
LRR [sensitive, ls]	282	305	0.0021
LRR [sensitive, ls]	282	305	0.042
LRR [sensitive, ls]	306	329	0.017
LRR [sensitive, ls]	306	329	0.34
LRR [sensitive, ls]	330	353	0.0012
LRR [sensitive, ls]	330	353	0.024
LRR [sensitive, ls]	354	377	0.71
LRR [sensitive, ls]	354	377	14
LRR [sensitive, ls]	378	401	2.4
LRR [sensitive, ls]	378	401	48
LRR [sensitive, ls]	402	425	0.00023
LRR [sensitive, ls]	402	425	0.0047
LRR [sensitive, ls]	426	449	2
LRR [sensitive, ls]	426	449	40
LRR [sensitive, ls]	450	473	0.048
LRR [sensitive, ls]	450	473	0.97
LRR [sensitive, ls]	474	497	0.35
LRR [sensitive, ls]	474	497	7
LRR [sensitive, ls]	498	521	0.0028
LRR [sensitive, ls]	498	521	0.057
LRR [sensitive, ls]	522	545	0.0015
LRR [sensitive, ls]	522	545	0.03
LRR [sensitive, ls]	546	569	0.14
LRR [sensitive, ls]	546	569	2.7
LRR [sensitive, ls]	570	593	0.006
LRR [sensitive, ls]	570	593	0.12
LRR [sensitive, ls]	619	641	0.025
LRR [sensitive, ls]	619	641	0.51
LRR [sensitive, ls]	642	664	0.021
LRR [sensitive, ls]	642	664	0.42

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	3	659	1e-103
Xa21 [O. sativa]	3	587	5e-77
Cf-9 [L. pimpinellifolium]	38	677	4e-60
Xa21 [O. sativa]	40	373	2e-29
CLV2 [A. thaliana]	47	561	1e-56
FLS2 [A.thaliana]	61	1073	1e-144
Cf-9 [L. pimpinellifolium]	70	558	3e-44
CLV2 [A. thaliana]	74	329	7e-16
CLV2 [A. thaliana]	80	446	5e-32
Xa21 [O. sativa]	112	884	2e-81
CLV2 [A. thaliana]	116	731	1e-70
FLS2 [A.thaliana]	195	669	2e-74
Rpg1 [Hordeum vulgare]	761	1072	4e-21
Pto [L. esculentum]	775	1065	9e-34
Rpg1 [Hordeum vulgare]	775	1072	3e-32

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5462.m00113

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)