Report for 5484.m00126

 > 5484.m00126, length: 1434, copies: 1 

MWLVGSVVDAAIGCLVQSILGSFFTEQMEAWTHEIGLAEDIEKLEFEMKAVERVLAAAEGRSIDNKLLAQSLGSL

RDLLYDAEDVMDELDYHRLKHWIEKEQLNDIGITSVFRCYNFVQGNISFCSGGFPFWFPQQIEFAFAGEGSSAAA

DNNPGTNYAASSISSSAYQLICSARQKITSWISSGRKRKREEEEPTDSTMLPHDIKRDISKRINRIVNNLQKTGN

SVSGVLQLEIPCRGLTSNQRHRMARNTRLTTSVPIEPKVYGRDADKDRIIEMLINEGSSDLLVIPIVGIGGIGKT

TLARFVYRDQRIIDHFDLQIWICVSTNFNEDSSGWDKLLAPLKCNQVTGCAVLATTRRSSVAQMIGTVNAFQISG

LDKKEFWLFFKACAFGNEAYEGQPSLQSIGQKIAKTLKGCPLAARSVGALLNRDVSYEHWRTVQDKWKSLQVKDD

DIIPILKLSYDYLPFHLQCCFSYCSLFPEDHWFNEETLVQAWISQNFVQYEDTGAGLEETGLQYLANLVDFGFFQ

KIGSHYAMHDLMHELAEQVSSNECAKINGIQLNVIPPNIRHLSIITTSHENDAPEDFLIEKFEEILQKIRPFQKL

RSLMFFGQSSTKLLNPTLTFCKEAKCLRLLRVYVSNAGINSLQNSLNPYHLRYLEFIGAYGDVVLPQALTSFYHL

QVLNVGIHGSHDVPTSMNNLVNLRHLIAHDKVHRAIAGVGNMSSLQELNFKVQNVGGFEIRQLQSMNKLVTLEIS

HLENVKTKDEASGARLIDKEYLKKLSLSWNGGSVSLEPDRSKDVLEGLRPHHNLKTLSITGYSDPNSPTWLSSNL

SVTSLQTIHLENCREWKILRSPKILPLLRKLKLVKMFNLVELSIPSLEELVLIEMPKLEKVLTIKDCPQLNEFTP

FGAEQWFPSLRELTIGCCPHISKWEILPLREMHALKSLELIDLHAVRQLEVPSLQKLVLINMLILECCSGLTAST

VQMSTSQGDKECLSGLRELTIHDCPCLVLSYPLPPSALTSHFSIKGIPTYPTMEKEYGQLSITSDELIMLDDKIL

AFHNLRGIESLFIKDCPNLVSISSEGLNQLIDLEGLYVTGCPNFTMTSGLVLPSVRFLSLQSCAISGSWLTEMLS

HVRSLKTLKLHDCPQIKFLSFSEPAAMEGASSLGSAATHSDRDEQLLKIPSNIIHSLRDLFISNCPDLEFGGEEG

ALRGYTSLESIKVQSCPKLIPLLVSGKMEVGSLPPSLRSLDIDMDPELSTVWDLKLQELEQGVNQLQSRLLSFLP

TITTLVISASPELTSLQLGYSKALEELIIVDCESLASVEGFGSLTNLSDPLQTAHSLASISFWPARSKRGATMMG

LTEEQERALQLLTSLEYLIFWHLPNLLSLPANLASLTSLKWLHIGDCPRITRLPEMGLPLSLTQLYNKHTWILQT

MVPRRNHLS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	248	330	3.7e-24
NB-ARC [Pfam ls]	248	503	1.9e-40
NB-ARC [Pfam fs]	335	503	5e-31
LRR [Pfam ls]	1388	1409	7.9

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	909	933	1.9
LRR [sensitive, ls]	909	933	39
LRR [sensitive, ls]	1057	1081	2.4
LRR [sensitive, ls]	1057	1081	49
LRR [sensitive, ls]	1129	1153	2.7
LRR [sensitive, ls]	1129	1153	55
LRR [sensitive, ls]	1181	1206	2.9
LRR [sensitive, ls]	1181	1206	58
LRR [sensitive, ls]	1298	1320	2
LRR [sensitive, ls]	1298	1320	40
LRR [sensitive, ls]	1364	1387	1.6
LRR [sensitive, ls]	1364	1387	32
LRR [sensitive, ls]	1388	1409	0.39
LRR [sensitive, ls]	1388	1409	7.9

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa1 [Oryza sativa]	8	1408	1e-173
I2 [L. esculentum]	231	1415	3e-80
Pi-ta [Oryza sativa]	243	749	7e-13
Pib [Oryza sativa].	252	706	8e-23
RPS2 [A. thaliana]	258	941	6e-20
RPM1 [A. thaliana]	261	913	9e-24
Mla1 [Hordeum vulgare].	264	875	2e-19
Xa1 [Oryza sativa]	850	1415	4e-19

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	36	61

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5484.m00126

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)