Report for 5484.m00132

 > 5484.m00132, length: 2014, copies: 1 

MEVWNTVGQAAIGWLVESVLGSLFTDKLSSWLRRVNLDDNVEELVSEMRNVAVVLEAAKGMKVGDQNEPMAGSLL

HLKDLLYDADDVLDKLDYCRLQEQIIKDARGDVSKGLKINGLKSPEASNLSHRSTARATNSTTTSYVLEPIVYGR

PTEIESIKNLIMSNRSDGMIVLPIVGNGGIGKTTLAQQIYKDSEIRKSAIKIWIHVSDKFDLHKVTREILECVSK

KKQKETSNFNVELFNVVSISSVVDHMNCRVTLDRENCLIEERRTGRKLGIGISQNGLWYLDRSGTNKALCSALPV

GTSEEEARLILQHCRLGHMCFETMRKIYPDEMSKVDRSKLVCDACEYGKHTRATYISRGLRSISPFMLIHSDVWT

SPIVSVSGMKYFVTFIDCYSRMTWIYLMKHKNEVLKCFKDFYAFVRNQFNTCVKIIRTDNGKEYVNNEFGSFLSI

EGILHQTSCPDTPPQNGVAERKNRHILEVARSLMYTMNVPKFLWSETVMTATYLINRTPSRILGMKAPYEMVFGC

NEFIVPPKVFGCVCFVRDHRPSVGKLDPRAIKCIFIGYSSGQKGYKCWSPSERRTFVSMDVTFRESIPFYGEMTD

LSYLFSDLDNPIMSEDRYEGVNESLGMEEGDESKRTKVVIGSIPCPMGKLPHEQNWRKPHEEENLQVYTRRKPRS

LETQQVEQQPLTIDRNEMVEQHQQPLVIDEINDQSSYQSDPIQENTETGGEESEISGEESNLPIANRKGIRSTAG

KPPIRYGFEEVEEENGNDIANYVSYSSLSPAYRAFIASLQSIVIPKDWREAKNDPKWHEAMMEEMSALEKNKTWE

LVPFPTGKKVVSCKWVYAVKQDPLGKVERYKARLVAKGYSQTYGIDYDETFAPVAKMSTVRTLISCAANFDWPLY

QLDVKNAFLHGDLQEEVIWRFHRVFPPLKLKERFRRAMCGMGYKQCNGDHTLFYRHRGKKIAILAVYVDDIIITG

DDTQEIAQLKENISKEFEVKDLGQLKYFLGIEIARSPRGIVLSQRKYVLDLLCDTVYRILRYLKGSPGKGLWFKK

NGHLGVEGYCDADWASSLDDRRSTSGYCVFVGGNLVSWRSKKQPVVSRSTAEAEYRAMSQDLEENMKSKRFLIVL

DDVWDVTTDCWNKLLAPLRANHVNPSKEKVTGNSMVIVTTRKNTTAKLCGTVGSINLEGLKDDDIWSLFKAYAFG

SDKHSNNPILQNLGRKIAKELNGNPLAAKTVGSLLRRNLTVDHWSSIIENEEWKSLQHTDGIMHTLKFSYDHLPS

HLQQCFSYCSLFPKGYSFSEAQLIQIWIAQGFVEKSSEKLEQKGWEYLAELVNSGFFQQVENEWPSSEDIVLHDL

MHDLARMVSKTECATIDGSECEKLAPSIRHLSIVTDSAYSEDPHGNISRNEEFEKRLLKVMSRKGEELPSSDSNG

SPSSEYFTDIISNEVIYGLEPHHSLKHNGVTSPTCLATSLTSLQTLYLENCGKWQILSLERLCLLKKLVLIRMSN

VVEVSICSLEELVLIKMPKLKRCFCTSIRNLNDNLRVLMIKTCPALEVFPLFDNCQQFKIEQPSWLFRLSKLVIH

KCPHLHVHNPLPPSTNVSKLSITGVSTLPTVEWSRGILRIGVLDDSDDPSVIDEPSDQLITLDDKALQDLDLYEC

EQITGLSIGEEESSQPNLMSTPETLSLGHQGDSPTSSARDGLVRIPLNLISSLKHIYIGDCPGLTYNGNDEGFAK

LTSLESLRIMNGAKLLSSLVHGNGYDERKNIKLIPLSLEVLELRGYDLPEEVVPDFLRNPIRLKKLSVMDTLSLK

YLQLQSCTALEELEIVNCESLATLEGLQSLRSLKNLIIWGCPILPQWLWSSLEQVQELLPRLERLKIQDASVLTT

SFCKHLTSLQRLTLFACNWELVRQTDEQDIALQLLTSLQELSFTCCRNLGDFPVDLYSLPSLKRLNIYYCKDISR

LPEKGLPPSLEELDINDCSEELNDQCRMLPSKLKEDEQRRRFTSRSLNLVRLPEVRLPHAHDFH

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	131	221	1.5e-14
NB-ARC [Pfam ls]	1037	1313	4.2e-22
NB-ARC [Pfam fs]	1111	1313	7.3e-45
LRR [Pfam ls]	1912	1935	4.9
LRR [Pfam ls]	1936	1957	1.7

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
Integrase core domain [fs]	361	523	5.5e-44
Integrase core domain [ls]	361	523	7.9e-44
LRR [sensitive, ls]	1467	1491	3.7
LRR [sensitive, ls]	1467	1491	74
LRR [sensitive, ls]	1534	1556	2.7
LRR [sensitive, ls]	1534	1556	54
LRR [sensitive, ls]	1641	1665	3.5
LRR [sensitive, ls]	1641	1665	70
LRR [sensitive, ls]	1702	1727	1.4
LRR [sensitive, ls]	1702	1727	28
LRR [sensitive, ls]	1762	1786	6.5
LRR [sensitive, ls]	1762	1786	130
LRR [sensitive, ls]	1809	1831	1
LRR [sensitive, ls]	1809	1831	21
LRR [sensitive, ls]	1912	1935	0.24
LRR [sensitive, ls]	1912	1935	4.9
LRR [sensitive, ls]	1936	1957	0.087
LRR [sensitive, ls]	1936	1957	1.7
LRR [sensitive, ls]	1959	1984	6.9
LRR [sensitive, ls]	1959	1984	140

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	7	233	1e-13
Xa1 [Oryza sativa]	9	100	2e-14
Xa1 [Oryza sativa]	122	235	5e-30
I2 [L. esculentum]	1029	2008	6e-55
RPS2 [A. thaliana]	1081	1311	5e-16
Pib [Oryza sativa].	1098	1383	1e-21
Pi-ta [Oryza sativa]	1104	1393	2e-13
RPM1 [A. thaliana]	1105	1362	6e-28
Xa1 [Oryza sativa]	1108	1976	1e-127
Mla1 [Hordeum vulgare].	1112	1360	1e-15
Xa1 [Oryza sativa]	1414	1976	1e-72
Xa1 [Oryza sativa]	1464	1984	1e-72

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
Integrase core domain	361	523	6.6e-44

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5484.m00132

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)