Report for 5494.m00114

 > 5494.m00114, length: 924, copies: 1 

MRVMSHLLLHGGVLLLLLAAAAVQAQRVATKTDPTEAAALNAVFAKLGQQASLSTATWNISGDPCTGAATDGTPI

DDNPNFNPAIKCDCTFQNNTVCRITKLKIYALDVPGTIPQELRNLTRLTHLNLGQNTLTGPLPSFIGELTNMQNM

TFRINSLSGPIPKELGNLTNLVSLGLGSNRFNGSLPSELGNLDKLQELYIDSAGLSGPLPSSFSKLTRMQTLWAS

DNDFTGQIPDYIGNWNLTDLRFQGNSFQGPIPSALSNLVQLSSLILRNCKISDNLASIDFSKFASLNLLDFSYNQ

LSGNFPPWASGKNLQLNLVANNFVIDSSNNSILPSGLACLQRNTPCFLGSPQSSSFAVDCGSNRLISASDNLRYQ

TDDASLGPASYSVTGAPTWGVSNVGKFVDAPNGSYIIYSSRQFQNTLDSELFQTSRMSPSSLRYYGIGLENGNYT

VTLQFAEFGIEDTQTWKSLGRRVFDIYLQGERQEKNFDIRKAAGDKSYTVVKKSYKVPVTKNFLEIHLFWAGKGT

CCIPGQGYYGPTISALSVTPAVLGLVALVGIFMWRQKRRKLTLEQQELYSIVGRPNVFSYSELRSATENFSSSNR

LGEGGYGAVYKGKLNDGRVVAVKQLSQTSHQGKKQFATEIETISRVQHRNLVKLYGCCLEGNNPLLVYEYMENGS

LDKALFGIEKLNIDWPARFDICLGIARGLAYLHEESSIRVVHRDIKASNVLLDANLNPKISDFGLAKLYDDKKTH

VSTKVAGTFGYLAPEYAMRGHMTEKVDVFAFGVVLLETLAGRPNYDDTLEEDKIYIFEWAWELYENNNPLGIVDP

NLREFNRAEVLRAIHVALLCTQGSPHQRPPMSRVVSMLTGDTEVTDVLMKPSYITEWQIKGGNTSFANSAVRGQS

SSAPGSTSQQASSVFLNSIIQEGR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	122	145	0.35
LRR [Pfam ls]	170	193	6.4
LRR [Pfam ls]	194	217	0.87
LRR [Pfam ls]	241	264	0.1
LRR [Pfam ls]	290	312	8.8
Ser/Thr pkinase [Pfam fs]	595	800	4.9e-58
Ser/Thr pkinase [Pfam ls]	595	865	2e-54

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	98	121	4.6
LRR [sensitive, ls]	98	121	92
LRR [sensitive, ls]	122	145	0.017
LRR [sensitive, ls]	122	145	0.35
LRR [sensitive, ls]	146	169	3.9
LRR [sensitive, ls]	146	169	78
LRR [sensitive, ls]	170	193	0.32
LRR [sensitive, ls]	170	193	6.4
LRR [sensitive, ls]	194	217	0.043
LRR [sensitive, ls]	194	217	0.87
LRR [sensitive, ls]	241	264	0.0051
LRR [sensitive, ls]	241	264	0.1
LRR [sensitive, ls]	265	289	0.68
LRR [sensitive, ls]	265	289	14
LRR [sensitive, ls]	290	312	0.44
LRR [sensitive, ls]	290	312	8.8

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Cf-9 [L. pimpinellifolium]	55	340	3e-12
FLS2 [A.thaliana]	60	437	3e-21
Cf-9 [L. pimpinellifolium]	84	332	1e-16
Cf-9 [L. pimpinellifolium]	90	306	1e-17
Cf-9 [L. pimpinellifolium]	93	324	2e-13
Xa21 [O. sativa]	93	332	1e-25
FLS2 [A.thaliana]	94	322	3e-23
FLS2 [A.thaliana]	98	306	2e-30
FLS2 [A.thaliana]	98	370	4e-22
Xa21 [O. sativa]	98	307	1e-25
Xa21 [O. sativa]	98	324	2e-18
CLV2 [A. thaliana]	101	288	5e-17
CLV2 [A. thaliana]	102	316	7e-16
Cf-9 [L. pimpinellifolium]	108	303	5e-18
CLV2 [A. thaliana]	111	359	5e-19
FLS2 [A.thaliana]	111	863	6e-66
FLS2 [A.thaliana]	111	322	8e-28
FLS2 [A.thaliana]	111	371	2e-22
Xa21 [O. sativa]	118	306	1e-20
Cf-9 [L. pimpinellifolium]	121	350	2e-14
CLV2 [A. thaliana]	122	341	3e-11
Xa21 [O. sativa]	546	677	3e-14
Pto [L. esculentum]	583	860	2e-59
Rpg1 [Hordeum vulgare]	583	864	3e-38
Rpg1 [Hordeum vulgare]	583	863	6e-33

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	7	24	in -> out

Report for 5494.m00114

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)