Report for 5494.m00115

 > 5494.m00115, length: 992, copies: 1 

MRVSHLLLHGGVFLLLLAAAVVQAQRVATKTDPTEAAALNAVFAKLGQQAAASWNLSGDPCTGAATDGTDFSDQN

TTAIKCDCSDQNNTVCHITRLKIYARDAVGQIPEELQNLKHLTHLTFGINALSGPIPKELGNLTNLISLGFGSNN

FSGSLPSELGNLFKLEELYIDSSGLSGALPSSFANLTRMKILYRPFKRHVLVDINVRFHDICVSFYLFRWASDNN

FTGQIPDYIGSWNLTDLRLQGNSFQGPLPATLSNLVQLTNLRIGDIASGISSSLAFISSMTSLNTLILRNCMISN

SLESIDFSKYASLTLLFLGNNSLTGKLPTSIGRSFRVLDFSYNQLSGYLPSWVSGKDLQFILPSMQYLNCLQRST

PCFLGSPKTASFAVNCGGPLTSGSDNLRYQSDEVNLGDASYYITGEPTWGVSTVGRFMDASNGGYTIRSSRQFQN

TLDSEMFQNTRTSASSLRYYGIGLENGNYTVTLQFAEFGFEDTQSWKSLGRRVFDIYLQGERKEQNFDIRKAAGD

KSYTVVKRSYKVPVTKNFVEIHLFWAGKGTCCIPTQDNYGPSISALSLIPADFTPTVSTSISPEGNNNTSKAGVS

TSKAGVIVGVVVGVTILGLIALAAILIWRQNRRKRKLSLEQQELYSIVGRPNVISYGELRSATENFSSSNLLGEG

GYGAVYKGKLTDGRVVAVKQLSQTSHQGKVQFAAEIQTISRVQHRNLVKLYGCCLESNNPLLVYEYMDNGSLDKA

LFGTGKLNIDWPARFGICLGIARGLAYLHEESSIRVVHRDIKASNVLLDAYLNPKISDFGLAKLYDDKKTHVSTK

VAGTFGYLAPEYAMRGRLTEKVDVFAFGVVLLETLAGRPNYDDALEEDKIYIFEWAWELYENNYPLGVVDPRLTE

YDGEEALRAIRVALLCTQGSPHQRPSMSRVVTMLAGDVEVPEVVTKPSYITEWQIKGGNTSFMGSDVSWRSSSAP

REIISPQDSSPFLSSVE

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	116	139	8.9
LRR [Pfam ls]	164	187	0.26
LRR [Pfam ls]	238	261	0.35
Ser/Thr pkinase [Pfam fs]	666	864	4.1e-56
Ser/Thr pkinase [Pfam ls]	666	936	7.8e-55

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	92	115	5.7
LRR [sensitive, ls]	92	115	120
LRR [sensitive, ls]	116	139	0.44
LRR [sensitive, ls]	116	139	8.9
LRR [sensitive, ls]	140	163	0.53
LRR [sensitive, ls]	140	163	11
LRR [sensitive, ls]	164	187	0.013
LRR [sensitive, ls]	164	187	0.26
LRR [sensitive, ls]	238	261	0.017
LRR [sensitive, ls]	238	261	0.35
LRR [sensitive, ls]	287	309	1.6
LRR [sensitive, ls]	287	309	33
LRR [sensitive, ls]	312	332	0.99
LRR [sensitive, ls]	312	332	20
LRR [sensitive, ls]	334	357	0.81
LRR [sensitive, ls]	334	357	16

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
CLV2 [A. thaliana]	13	350	2e-13
Xa21 [O. sativa]	47	351	1e-20
FLS2 [A.thaliana]	56	354	2e-17
FLS2 [A.thaliana]	85	354	1e-19
Xa21 [O. sativa]	87	351	1e-16
Cf-9 [L. pimpinellifolium]	88	402	1e-15
FLS2 [A.thaliana]	89	361	6e-23
FLS2 [A.thaliana]	92	358	2e-22
FLS2 [A.thaliana]	92	350	3e-22
Cf-9 [L. pimpinellifolium]	93	355	4e-11
CLV2 [A. thaliana]	96	350	3e-12
FLS2 [A.thaliana]	96	350	3e-14
CLV2 [A. thaliana]	104	361	7e-15
FLS2 [A.thaliana]	602	934	8e-39
Xa21 [O. sativa]	606	748	1e-15
Rpg1 [Hordeum vulgare]	657	931	1e-32
Pto [L. esculentum]	658	944	3e-57
Rpg1 [Hordeum vulgare]	659	935	1e-36

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	606	628	out -> in

Report for 5494.m00115

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)