Report for 5494.m00117

 > 5494.m00117, length: 948, copies: 1 

MRRFIRSRVRRQIHLHGSVLLIILLLLAAAVAQAQQAPTTRTDPTEAAALNAVFAKLGQKAQPSWNITGDPCTGR

ATDGSSTEDDSFNPAITCDCTDQNGTVCHITKLKIYAMDASGPIPEELRNLTRLTNLNFGINALSGSIPKEFGNL

TNLISLGLGSNNFSGPLPSELGNLDKLTGLYIDSAGLSGELPSSFSKLTKVEKLWASDNNFTGKIPDYIGSWNLT

DLRFQGNSFQGSIPATLSKLVQLTNLRIGDIENGSSSLAFISNMTSLSILVLRNCKISDNLASIDFSKFASLKLL

DLSFNNITGQVPEAMLGLNSLNFLDFSYNQLSGNFPSWANEKNLQLNLVANNFVLDNSNNSVLPSGLECLQRNTP

CFLGSPHSASFAVNCGSNRSISGSDNYVYQADGVSLGAAQYYVTGETKWGVSNIGKFMDAPSNGIYIFNSSRQFQ

STLDPELFQTARLSPSSLRYYGIGLENGNYTVTLQFAEIEFEDTKSWKSLGRRVFDIYIQGERKERNFDIRKATG

GKSYTAVKKQYLIPVTKNFVEIHLFWAGKGTCCIPAQGYYGPSISALSLKPNFIPTVRSAAAQRKSSSKTGVIVG

VVVGVAVFGLVALAAIFLWMQKRRKLSLEQQELYCIVGRPNVFSYGQLRSATENFNFSNRLGEGGYGAVYKGKLT

DGRVVAVKQLSQTSNQGKQQFATEIETISRVQHRTEKLNIDWPARFEICLGIARGLAYLHEESSIRVIHRDIKAS

NVLLDANLNPKISDFGLAKLYDDKKTHVSTKVAGTFGYLAPEYAMRGRMTEKVDVFAFGVVLLEILAGRPNYDDA

LEEDKIYIFEWAWDLYENNNPLGLVDPKLEEFNREEVLRAIRVALLCTQGSPHQRPPMSRVVTMLAGDVEAPEVV

TKPSYITEWQLKGGDTSYLDSEVSWQSSSAPGGPASPRTSSPFLSSVD

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	128	151	0.59
LRR [Pfam ls]	176	199	4.9
LRR [Pfam ls]	223	246	0.61
LRR [Pfam ls]	296	319	0.14
LRR [Pfam ls]	320	342	8.9
Ser/Thr pkinase [Pfam fs]	655	708	6.5e-11
Ser/Thr pkinase [Pfam ls]	655	892	5.7e-26
Ser/Thr pkinase [Pfam fs]	709	820	3.8e-29

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	128	151	0.029
LRR [sensitive, ls]	128	151	0.59
LRR [sensitive, ls]	152	175	0.85
LRR [sensitive, ls]	152	175	17
LRR [sensitive, ls]	176	199	0.24
LRR [sensitive, ls]	176	199	4.9
LRR [sensitive, ls]	200	220	3.7
LRR [sensitive, ls]	200	220	74
LRR [sensitive, ls]	223	246	0.03
LRR [sensitive, ls]	223	246	0.61
LRR [sensitive, ls]	271	295	1
LRR [sensitive, ls]	271	295	20
LRR [sensitive, ls]	296	319	0.0068
LRR [sensitive, ls]	296	319	0.14
LRR [sensitive, ls]	320	342	0.44
LRR [sensitive, ls]	320	342	8.9

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Cf-9 [L. pimpinellifolium]	84	353	3e-14
FLS2 [A.thaliana]	84	353	1e-22
Cf-9 [L. pimpinellifolium]	86	347	1e-21
FLS2 [A.thaliana]	91	379	8e-22
Cf-9 [L. pimpinellifolium]	92	336	3e-12
FLS2 [A.thaliana]	94	336	5e-24
Cf-9 [L. pimpinellifolium]	95	382	3e-16
CLV2 [A. thaliana]	95	361	8e-17
FLS2 [A.thaliana]	100	352	7e-29
Xa21 [O. sativa]	100	352	7e-25
Xa21 [O. sativa]	100	336	6e-21
FLS2 [A.thaliana]	102	370	1e-23
Cf-9 [L. pimpinellifolium]	104	380	2e-21
FLS2 [A.thaliana]	104	362	5e-25
FLS2 [A.thaliana]	105	890	8e-54
Xa21 [O. sativa]	105	337	2e-24
CLV2 [A. thaliana]	108	367	5e-21
FLS2 [A.thaliana]	108	364	4e-23
CLV2 [A. thaliana]	116	379	2e-22
Xa21 [O. sativa]	123	420	5e-21
Pto [L. esculentum]	643	890	9e-45
Rpg1 [Hordeum vulgare]	643	891	3e-27
Rpg1 [Hordeum vulgare]	643	887	4e-24

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	13	32	in -> out
putative TM domain	597	619	out -> in

Report for 5494.m00117

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)