Report for 5494.m00118

 > 5494.m00118, length: 860, copies: 1 

MALSVLLLLLAAVAQAQKAPTATTDRIEAEALKAVFEKLDQKAEWNTTGDPCSGAATDSTDINDSSINPAIKCDC

SDQNNTVCHITGLNLSHNFLVGTIPSFIGELAAMQYIKSHILSLEHTRTFGINALSGSIPKELGNLTNLVSLGFS

SNNFSGSLPSELGSLFKLEELFIDSAGLSGELPSSLSKLTRMKILWASDNNFTGQIPDYIGSWNLTDLRFQGNSF

QGPLPANLSNLVQLTNLILRNCMVSDSLALIDFSKFASLTLLDFSYNQLSGNFPFWVSEEDLQFALPSGLECLQQ

NTPCFLGSPHSASFAVDCGSTRFISGSRNSSYQADATNLGAASYHVTEPLTWGISNVGKFMDTPNGTTIINNARQ

FQATLDSELFQTARMSPSSLRYYGIGLQNGNYTVSLQFAEFGFEDTESWKSRGRRVFDIYVQGERKEKDFDIKKE

AGGKSYTAVKKDYIVSVTRNFVEIHLFWAGKGTCCIPTQGYYGPTISALSLSPSELFLLDFTPTIGNVAEQNSST

SKTVVIVAVAIGVTILGLVALVGIFLWRKKRRKLSLEQQELYSIVGRPNIFSYGELRSATENFSSSNRLGEGGYG

AVYKGKLMDGRIVAVKQLSQTSHQGKKQFATEIETISRVQHRNLVKLYGCCLEGNNPLLVYEYMENGSLDKALFG

TEKLHIGWPARFEICLGIARGLAYLHEESSIRVVHRDIKASNVLLDANLNPKISDFGLAKLYDDKMTHVSTKVAG

TFGYLAPEYAMRGHMTEKVDVFAFGVVLLETLAGRPNYDDVLEEDKIYIFEWVWRLYESERALDIVDPNLTEFNS

EEVLRAIHVGLLCTQGLTSPAAVHVEGRGDAHRRR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	84	107	1.5
LRR [Pfam ls]	143	166	2.5
LRR [Pfam ls]	167	190	4.1
LRR [Pfam ls]	214	237	4.5
Ser/Thr pkinase [Pfam fs]	588	786	5.2e-59
Ser/Thr pkinase [Pfam ls]	588	834	2.2e-52

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	84	107	0.075
LRR [sensitive, ls]	84	107	1.5
LRR [sensitive, ls]	143	166	0.13
LRR [sensitive, ls]	143	166	2.5
LRR [sensitive, ls]	167	190	0.2
LRR [sensitive, ls]	167	190	4.1
LRR [sensitive, ls]	214	237	0.23
LRR [sensitive, ls]	214	237	4.5
LRR [sensitive, ls]	238	262	1.3
LRR [sensitive, ls]	238	262	27
LRR [sensitive, ls]	263	284	0.52
LRR [sensitive, ls]	263	284	10

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	28	310	2e-15
FLS2 [A.thaliana]	32	224	1e-13
CLV2 [A. thaliana]	46	308	3e-12
FLS2 [A.thaliana]	77	307	2e-17
FLS2 [A.thaliana]	80	279	7e-19
FLS2 [A.thaliana]	81	289	3e-21
CLV2 [A. thaliana]	85	231	5e-17
FLS2 [A.thaliana]	85	279	1e-21
Xa21 [O. sativa]	85	331	9e-17
CLV2 [A. thaliana]	88	279	4e-16
CLV2 [A. thaliana]	88	277	7e-16
FLS2 [A.thaliana]	88	279	7e-19
FLS2 [A.thaliana]	88	279	2e-14
Xa21 [O. sativa]	88	244	4e-18
Xa21 [O. sativa]	88	232	8e-18
CLV2 [A. thaliana]	101	279	7e-11
Cf-9 [L. pimpinellifolium]	114	286	8e-11
CLV2 [A. thaliana]	126	300	1e-11
Xa21 [O. sativa]	132	279	1e-17
Xa21 [O. sativa]	486	670	1e-15
FLS2 [A.thaliana]	518	782	3e-38
Pto [L. esculentum]	576	830	2e-55
Rpg1 [Hordeum vulgare]	576	840	4e-34
Rpg1 [Hordeum vulgare]	576	840	8e-32

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	529	551	out -> in

Report for 5494.m00118

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)