Report for 5500.m00225

 > 5500.m00225, length: 628, copies: 1 

MAEARLLRRRRLCLAVPFVWVVAVAVSRVGANTEGDALYSLRQSLKDANNVLQSWDPTLVNPCTWFHVTCNPDNS

VIRVDLGNAQLSGALVPQLGQLKNLQYLELYSNNISGTIPNELGNLTNLVSLDLYLNNFTGFIPETLGQLYKLRF

LRLNNNSLSGSIPKSLTNITTLQVLDLSNNNLSGEVPSTGSFSLFTPISFANNKDLCGPGTTKPCPGAPPFSPPP

PFNPPTPTVSQGDSKTGAIAGGVAAAAALLFAVPAIGFAWWRRRKPEEHFFDVPAEEDPEVHLGQLKRFSLRELQ

VATDNFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTE

RLLVYPYMANGSVASRLRERQPNDPPLEWQTRTRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEDFEAVVG

DFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDW

VKGLLKEKKVEMLVDPDLQSGFVEHEVESLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWEEWQKVEVVRQ

EAELAPRHNDWIVDSTYNLRAMELSGPR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam fs]	99	122	1.5e-05
LRR [Pfam ls]	99	122	0.00023
LRR [Pfam ls]	123	146	0.62
LRR [Pfam ls]	147	170	0.087
LRR [Pfam ls]	171	193	0.015
Ser/Thr pkinase [Pfam fs]	306	505	3.9e-54
Ser/Thr pkinase [Pfam ls]	306	582	8.1e-51

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	75	98	3.9
LRR [sensitive, ls]	75	98	79
LRR [sensitive, ls]	99	122	1.1e-05
LRR [sensitive, ls]	99	122	0.00023
LRR [sensitive, ls]	123	146	0.031
LRR [sensitive, ls]	123	146	0.62
LRR [sensitive, ls]	147	170	0.0043
LRR [sensitive, ls]	147	170	0.087
LRR [sensitive, ls]	171	193	0.00076
LRR [sensitive, ls]	171	193	0.015

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	5	187	1e-23
FLS2 [A.thaliana]	21	209	3e-15
Xa21 [O. sativa]	30	200	2e-22
CLV2 [A. thaliana]	37	184	1e-14
CLV2 [A. thaliana]	43	187	3e-12
FLS2 [A.thaliana]	43	188	1e-17
Cf-9 [L. pimpinellifolium]	54	196	1e-11
FLS2 [A.thaliana]	62	203	2e-17
FLS2 [A.thaliana]	74	188	1e-13
FLS2 [A.thaliana]	75	204	2e-11
CLV2 [A. thaliana]	76	189	8e-17
FLS2 [A.thaliana]	76	580	9e-67
Xa21 [O. sativa]	76	388	3e-30
Cf-9 [L. pimpinellifolium]	78	187	1e-12
FLS2 [A.thaliana]	79	204	4e-18
FLS2 [A.thaliana]	79	186	3e-17
FLS2 [A.thaliana]	79	187	3e-13
FLS2 [A.thaliana]	79	204	4e-13
FLS2 [A.thaliana]	79	189	4e-13
Xa21 [O. sativa]	79	187	3e-16
Xa21 [O. sativa]	79	203	1e-14
Xa21 [O. sativa]	79	196	2e-12
Xa21 [O. sativa]	81	189	2e-11
FLS2 [A.thaliana]	86	203	1e-14
FLS2 [A.thaliana]	86	189	3e-14
Xa21 [O. sativa]	86	193	8e-18
FLS2 [A.thaliana]	87	203	2e-13
Cf-9 [L. pimpinellifolium]	103	224	7e-13
Rpg1 [Hordeum vulgare]	288	588	5e-39
Pto [L. esculentum]	293	581	2e-49
Rpg1 [Hordeum vulgare]	294	587	1e-27

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	244	266	in -> out

Report for 5500.m00225

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)