Report for 5501.m00161

 > 5501.m00161, length: 888, copies: 1 

MSWRLPWRSLVMILSVLQPMIYMSCGCLVEERAALMDIRASLIQANSTLVPRSWGQTEDCCSWERVRCDSSKRRV

YQLNLSSMSIADDFFSWELNITVFSAFRDLQFLDLSQNKLISPSFDGLLGLTKLRFLYFGAFENLTNLQELNLSS

NKFEGSIPKSLFSLPHLKVLDLCGNDFIKGGFPVPPEPVLLEVVNLCNTAMNGTLPASAFENLRNLRALNLSKMD

WSFNKFHGGLPASLFSLPHLKVLDLSGNFFEGGIPINSSSFPVSLEVLNLNNNNMNGTLPTEQAIENLGNLRELH

LSLNRFAGNIPRSLFSLPHIELLDLSGNLLEGPIPISSSSNLPAFIKSLRFSHNNLSGKFSFSWLKNLTKLEAVV

LSDNANLAVDVNIPGWVPQFQLKELALSGCDLDKSIITEPHFLRTQHHLEVLDLSNNNLPGSMHDWLFTEGARHY

KLDLGNNSLTGSLESTWYTQNFLKYINVSMNRVAGQLPDNINSIFPNLLVLDFSNNEIYGHIPIELCQIRQLRYL

DLSNNSISGEVPACLFTDHAVLESLKVSKNKLGGLIFGGMDNMSDSLSYLYLDSNKYEGSIPQNLSAKNLFVMDL

HDNKLSGKLDISFWDLPMLVGLNLADNTLTGEISPDICNLQYLRIIDFSHNKLSGSVPACIGNILFGDVHDHDIL

QIFYVEPFIELYDSHLMSTYYYYLSGFAFSTKGSLYIYGVNLFDLMTGIDLSANMFDGEIPWQLGNLSHIKSLNL

SYNFFTGQIPATFSGMKEIESLDLSHNDLSGPIPWQLTQLSSLGAFSVAYNNLSGCIPNYGQLASFSMESYVGNN

KLYNTSQGSWCSPNGHVPKEDVEERYDDPVLYIVSAASFVLAFCANVAFSFCHSYGRSAILKM

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	104	127	0.84
LRR [Pfam ls]	142	165	0.0042
LRR [Pfam ls]	190	214	7.9
LRR [Pfam ls]	244	267	0.23
LRR [Pfam ls]	295	318	2.1
LRR [Pfam ls]	319	343	0.22
LRR [Pfam ls]	345	369	0.49
LRR [Pfam ls]	423	447	6
LRR [Pfam ls]	497	520	5
LRR [Pfam ls]	521	545	0.013
LRR [Pfam ls]	594	617	4.8
LRR [Pfam ls]	618	641	3.5
LRR [Pfam ls]	744	767	0.038
LRR [Pfam ls]	768	791	0.76

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	104	127	0.042
LRR [sensitive, ls]	104	127	0.84
LRR [sensitive, ls]	142	165	0.00021
LRR [sensitive, ls]	142	165	0.0042
LRR [sensitive, ls]	166	189	2.4
LRR [sensitive, ls]	166	189	48
LRR [sensitive, ls]	190	214	0.39
LRR [sensitive, ls]	190	214	7.9
LRR [sensitive, ls]	244	267	0.011
LRR [sensitive, ls]	244	267	0.23
LRR [sensitive, ls]	269	294	0.59
LRR [sensitive, ls]	269	294	12
LRR [sensitive, ls]	295	318	0.1
LRR [sensitive, ls]	295	318	2.1
LRR [sensitive, ls]	319	343	0.011
LRR [sensitive, ls]	319	343	0.22
LRR [sensitive, ls]	345	369	0.025
LRR [sensitive, ls]	345	369	0.49
LRR [sensitive, ls]	396	419	2.4
LRR [sensitive, ls]	396	419	49
LRR [sensitive, ls]	423	447	0.3
LRR [sensitive, ls]	423	447	6
LRR [sensitive, ls]	497	520	0.25
LRR [sensitive, ls]	497	520	5
LRR [sensitive, ls]	521	545	0.00062
LRR [sensitive, ls]	521	545	0.013
LRR [sensitive, ls]	546	569	1.5
LRR [sensitive, ls]	546	569	31
LRR [sensitive, ls]	571	591	4.6
LRR [sensitive, ls]	571	591	92
LRR [sensitive, ls]	594	617	0.24
LRR [sensitive, ls]	594	617	4.8
LRR [sensitive, ls]	618	641	0.17
LRR [sensitive, ls]	618	641	3.5
LRR [sensitive, ls]	642	665	0.66
LRR [sensitive, ls]	642	665	13
LRR [sensitive, ls]	720	743	3.1
LRR [sensitive, ls]	720	743	64
LRR [sensitive, ls]	744	767	0.0019
LRR [sensitive, ls]	744	767	0.038
LRR [sensitive, ls]	768	791	0.038
LRR [sensitive, ls]	768	791	0.76

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
CLV2 [A. thaliana]	30	887	5e-53
Xa21 [O. sativa]	31	633	2e-36
Cf-9 [L. pimpinellifolium]	53	856	1e-78
FLS2 [A.thaliana]	61	827	3e-57
FLS2 [A.thaliana]	79	521	2e-26
Xa21 [O. sativa]	80	588	1e-26
FLS2 [A.thaliana]	105	603	1e-38
FLS2 [A.thaliana]	136	820	4e-54
FLS2 [A.thaliana]	139	658	4e-44
FLS2 [A.thaliana]	140	664	5e-48
Xa21 [O. sativa]	145	784	7e-36
FLS2 [A.thaliana]	194	830	5e-51
CLV2 [A. thaliana]	271	842	1e-37
Xa21 [O. sativa]	273	825	3e-38
CLV2 [A. thaliana]	465	805	1e-28
Xa21 [O. sativa]	619	808	3e-15
Xa21 [O. sativa]	726	830	6e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	855	877	out -> in

Report for 5501.m00161

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)