Report for 5534.m00094

 > 5534.m00094, length: 1132, copies: 1 

MMQGISPSSVMKTLDHAKNIISGKNGKLKKILKSLEKITEEGSQFLLLLERTIGSGTNGNGISNPANTSIRSTTS

SPTQIIIGRDKERDEIVRMLRDTGDEPKSWIIWAMGLKNYGLRLVFTMLSLIWAKIGWAITGLGPRLDPARSEAT

GDCEQSCRNSKCCYSVISIYGIAGSGKTTLAQNVCSYEKINNYFFPVMWIYVSPSFSVDKIYQKMLEAATGKPSS

EFSNLDTLQMKLEAELTGKRFLLVLDDIWHEKDAIAQDKLNQLLSPLKVGKKGSKVLVTTRFKDVAMSLSSQRII

PVPNFNEEDFFNLFMHYALDDAVSLDGQERETFYTIGREIARKLKGSPLAARIVGSRLRKHLDVTVWTRVGDQHL

LTDTMGALWWSYQHLNVQLRRCFAYCSMFPQGYDFKRDELVDLWMAEGFIKTTDSAEQMDVVCQSYFDELVSCSF

LQPKDIFGSKNKWFTMHDLLHELAAMVAGTDCFRVESGDMKEIPPDVRHLFIRSNDQTKFAEKICKLKKLRTLIL

ITTFGGLGITIEELEAMLKKLKKLRVVHVDVQGQMVSIPGCICELKHLRFLRIHSPWSEKVNLPKKLDTTYHLQI

LELCGAGVLDFSNVQNMSHLISLRDIRNSGFVFPNTDVPGFPGIGELKSLRELSDFRVRKDKGYELKQLKSINHL

RGRLRISGLESVESKEDALEAKLTDKKFLTSLSLEWSQFSSVQHSCPPDLQVEILEGLCPPSQLTELEIQQYNGL

RCPSWLSSENQNGIFTNLQDLQLCRCYNLDHLPEIGKLFVSLRQLKLVVFPKLKRMPRLPGTLKNLHIQQCKALV

MTCSEDVNMIRSLFVETATQIEPSLNITATEVAEIERFAGEQPDRFEKILCDIFSRCGSLPGELIRGHIREEDYS

ELTLPATVVDRLIISYCFVTNTVLHRCLTGSANLVSLNLRCLPFLTEIPSEVMESMAKLSDLSIEDCIQFTHLEG

LNNLSRLQHLTIAKCPNLRALGEDQKVRSLNGLAIDDIPLVPQLLSREGCSSLWSLRIDESEQLRGGDILEQLTS

LTSLDFSCCSWDRLPENLVNLTSLENLRLDCCKKIQSLPELPASLQSFEVEDCDALFMKSCQKAGDQNCQKIAHV

PVKRFSS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	133	430	7.8e-34
NB-ARC [Pfam fs]	166	430	3.3e-41
LRR [Pfam ls]	1073	1096	1.9

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	597	618	3.3
LRR [sensitive, ls]	597	618	66
LRR [sensitive, ls]	703	726	3.7
LRR [sensitive, ls]	703	726	75
LRR [sensitive, ls]	767	789	0.65
LRR [sensitive, ls]	767	789	13
LRR [sensitive, ls]	933	957	0.49
LRR [sensitive, ls]	933	957	9.8
LRR [sensitive, ls]	958	980	1.1
LRR [sensitive, ls]	958	980	22
LRR [sensitive, ls]	1050	1072	4.2
LRR [sensitive, ls]	1050	1072	86
LRR [sensitive, ls]	1073	1096	0.093
LRR [sensitive, ls]	1073	1096	1.9

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	165	1132	1e-78
Xa1 [Oryza sativa]	165	1091	2e-86
RPM1 [A. thaliana]	166	836	1e-34
RPS2 [A. thaliana]	166	493	2e-17
Pib [Oryza sativa].	166	608	2e-25
Pi-ta [Oryza sativa]	166	675	4e-18
Mla1 [Hordeum vulgare].	167	657	8e-26
Xa1 [Oryza sativa]	938	1112	1e-10

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5534.m00094

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)