Report for 5534.m00102

 > 5534.m00102, length: 916, copies: 1 

MALPSRRWAGAVESGVDPVAEAWAKLLRSLSQAMARLRVQMESFDDAQMRWALAAGVRAKAQLLASRLAQILALF

WDEGQRAALPACVRDALYGMEDMVDDLEYHMLKFQPHQQEVRCNLLISLVNLRYRLIISHASRSRFLKDLDFVAS

EAGSLLSAMHKLEPTAPSLPALLLADDDHQVVFGRHKEVTDIVRILIDPPASHHHHPTYDILPIVGMGGVGKTTL

AKLVYDDAKVKQHFELRLWASVSTSGGFHKIDITEQILRSANPTYPASIHSEPTLDMLQFHLSQLVASKRFLLVL

DDIREESFTSMACQEILSPLSSAEKGSRILVTTTTASVPAMLGASCTYHLNVLDIEDLWSLLKKYAFHGGPTHDS

TQELEEIGRNIASKLKGLPLAAKMLGGLLGATKSTKTWMNVLDKELYGDSILPVLELSYSYLPRRLKQCFSFCSL

FPRNYKFNKRVLIQLWMAQGFVQSQNSADKNMEDLAEDYFEELLSRSFFDVRREACETHYVMHDLVHDLAQSVSA

DQCLRVEHGMISEKPSTARYVSVTQDGLQGLGSFCKPENLRTLIVLRSFIFSSSCFQDEFFRKIRNLRVLDLSCS

NFVQLPNSIGELVHLRYLSLPRTLNMLPESVSKLLHLESLCFHKCSLEKLPAGITMLVNLRHLNIATRFIAQVSG

IGRLVNLQGSVEFHVKKGVGCTLEELKGLKDLRGKLKIKGLDNVLSKEAASKAELYKKRHLRELSLEWNSASRNL

VLDADAIILENLQPPSSLEVLNINRYQGAICPSWLQLSSLKQLQSLDLINCRNLEILPPLGLLPSLKYLCMKELC

TVNQIGHEFYGDDDVPFPSLIMLVFDDFPSLFDWSGEVKGNPFPHLQKLTLIDCPNLVQVPPLPPSVSDVTMERT

ALISYLRLARLSSPRT

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	164	477	4.8e-56
NB-ARC [Pfam fs]	210	477	2.5e-57
LRR [Pfam ls]	591	613	0.17
LRR [Pfam ls]	792	814	3.3

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	591	613	0.0083
LRR [sensitive, ls]	591	613	0.17
LRR [sensitive, ls]	636	655	1.5
LRR [sensitive, ls]	636	655	29
LRR [sensitive, ls]	792	814	0.16
LRR [sensitive, ls]	792	814	3.3
LRR [sensitive, ls]	870	892	3.4
LRR [sensitive, ls]	870	892	69

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pi-ta [Oryza sativa]	26	682	2e-21
RPM1 [A. thaliana]	86	663	1e-49
I2 [L. esculentum]	88	886	1e-108
Xa1 [Oryza sativa]	157	891	2e-80
Mla1 [Hordeum vulgare].	167	745	9e-32
Pib [Oryza sativa].	175	664	3e-32
RPS2 [A. thaliana]	211	886	2e-29

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5534.m00102

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)