Report for 5534.m00103

 > 5534.m00103, length: 583, copies: 1 

MARPGCRRRRRRPGAGGGVDGQARAAAATRRGQRSRRLGAAVATARRGRWHRRPGATWAGDGVGQGTGGGCEGQA

RAAKARPSAGGGGSPRRRCPSTDREGERRRLGMPIGAISTVGPAISPGIKIAEIAESFVARKYRRLRDYRKDVAQ

LVGEVGKIAVAVDTVEEQEQFMSDRRIVGQLSELMDAIHEAEDILDAVDYRDSIWARKHKVRQVIHSIVEQAKRI

VGIDGALNRLDKSMNDLPRMQQNQRDLVQLSNFRSSQGGGDGGASASRPRSATGLLPDGKLYGYKEEYDRLVSAL

LYDPPRRPGGNGNGGGQVVAVVGDGGVGKTALAQHALRHVDVQARFDHVIWASVPHKYRNKDLLAEIWMSGPGAT

ATAATHRCADQMSFGALQAEFVRLVSLSSQRYLLVLDDVCNDESDDDDHQRSRKEWEDVLAPFKQGGTREHMISF

TLDIRADAVHLLHEDFLHPDHIKAIGSIRIEHYTWSTEPNLNLLASVRSLSLTRCPVTDRSLSMCLHKLQSLERL

EISDCPELHDFPDDAMPMMASLKSLEFNGCHPLLMKKLQGRTGAAWERIRSIQRLEIV

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	270	368	3.4e-09
NB-ARC [Pfam ls]	270	556	1.2e-05

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	138	462	9e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5534.m00103

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)