Report for 5535.m00168

 > 5535.m00168, length: 937, copies: 1 

MAEAVVFGILCKIGSILSSHLTQAFVAHLGKEVSVFIEIESSIKQIRSEFRLMQAFLQDGQEKESHSRLAETFLH

EVQQVSFEVEDILDEFVYLFGQKQTASLKSLRNFFPKSKSMMHWQRLAAELKEAQNRLQNLRNLKVQYNIDLSEE

SPSSIRYEDSQVHTIQHIKHNNKIVGFANERDCLQELLMTNEKSCSIISIWGMGGSGKTTLVKTVFERKAIKNRF

DCLIWVTVSQTYDITEIMRKIIQCALKETCPADLESMCSEGVALKLQGTLQGRTYMMILDDVWDTNVWFNLEPFL

DLNSRGSKVVITTRINDVASLADDKNRLQLRGLNEAESWDLFCMWAFRHTEDQTCPLRLERVARQIVGRCEGLPL

AITAVGNLLSFKRLDSFEWDKFYNQLNWELHNRLDNQGLNMVTRLLGLSYRHLPAHLKNCFLLSSIFPEDYMIHG

KWLSRLLIAEGLVEPRKNMTLEEIATEYIEKLVDRCLLQVVRRDKLGRIWQLQMHDIVRELAISISEKEGFCMIY

TSKEAHTSVVGCEPRRLSVHENYDRVQQIINAQRIRSFYPYQLDSDYSVMSNVQWVSTSARYLKVLELSNIPITT

LPRDIGSLFNLHYLGLRRTXGGLQNLRTLDIYLTEIGKLPSGVTRLRLLRHLIAGKAEATYFGLADVYSGVQMPN

GTWQSLDINVFTGISASNKLVEQLAKLTQLRSLKLSDVKSTHYAKLFVSISKMRLLQSLLIETANRDECVSLEAL

NPAPHHLELLFMKGKLHESVIGCHLFEVNRLSLRELNLQNSRLSIDPLPSLSNFCNLTLLGLFNTYSGESLLFQA

GWFPKLQTLTLAELQNVNSIVIQEYSMANLYNLALICLKNLEYLPQGMEFLKSVEEFNLVGMHHKFMEDVQAGSS

YEKVKHIPVVDYFDQSKGRWDRLSRVYGKDQDNKHQQ

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	157	468	4.6e-72
NB-ARC [Pfam ls]	157	468	1.2e-72
LRR [Pfam ls]	587	609	7.5
LRR [Pfam ls]	625	647	9.2
LRR [Pfam ls]	782	808	0.77

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	135	164	7.2
LRR [sensitive, ls]	135	164	150
LRR [sensitive, ls]	587	609	0.37
LRR [sensitive, ls]	587	609	7.5
LRR [sensitive, ls]	625	647	0.45
LRR [sensitive, ls]	625	647	9.2
LRR [sensitive, ls]	782	808	0.038
LRR [sensitive, ls]	782	808	0.77

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	1	913	1e-107
Mla1 [Hordeum vulgare].	5	742	6e-49
I2 [L. esculentum]	14	656	8e-55
Pib [Oryza sativa].	52	363	1e-19
Pi-ta [Oryza sativa]	70	545	7e-29
M [L. usitatissimum]	127	818	6e-16
Pib [Oryza sativa].	160	656	1e-46
L6 [L. usitatissimum]	168	519	2e-11
N [N. glutinosa]	168	511	4e-11
Xa1 [Oryza sativa]	174	654	2e-35
RPS2 [A. thaliana]	189	883	2e-32

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	118	147

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5535.m00168

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)