Report for 5548.m00154

 > 5548.m00154, length: 962, copies: 1 

MAEAIILALSKINSTFGLDPTNIAKSAVSKLYQKGKSLAELPGKVEEIRMELTTMENVIEQLDTAHLTDKVIKGW

IAEVRKLAYHVEDVMDKYSYHALQMEEEGFLKKYVVKGSHYAIVFDGIVAEIVQIEQEIQRVIKLKDKWLQPSQL

IRNKHSDFERKRSQGCLPELVKDEDLVGIEGNRMLLTGWLYSNELDSTVIIVSGMGGLGKTTIVANVYERGKIRF

HAHAWIVVSQTYDVEELLRKVLRKIGYADQAHLDGMDVHDLKEKFKENISDRRCLIVLDDVWDREAYNQIHDAFQ

NLQASRIIITTRSKHVAALALPTRHLKLQPLDKVDAFSLFCRRAFYSRKDYDCPSELLELANSIVDRCQGLPLAI

VSIGSLLSSKQPIQHAWKQTYNQLQSELAKSDHVQAILNLSYYDLPGDLSNCFLYCSMFPEDCPMPRDNLVRLWV

AEGFAARKENNTPEDVAEGNLNELINRNMLEVVETDELGRVSTCKMHDIMRDLALFVAKDERFGSANDSGTMMLM

DNEVRRLSMCRWEDKGVYKAKFPRLRTLISVQTISSSSNMLSSIFSESTYLTVLELQDSEITEVPTSIGNLFNLR

YIGLRRTKVKSFPETIEKLYNLHTLDIKQTKIEKLPRGIVKVRKLRHLLADKCADEKHSDFRYFTGVQPPKELSN

LEELQTLETVEASKDLAEQLKKLTQLKTETLCFKTLEPISGRLHKLIVRGHWANGTLQCPIFQDCGRNLKYLALS

WCHLGEDPLSLLASHVPYLTFLRLNRVYTTKTLVLSAGCFPELKTLVLKHMPDVNKVEIEDRALPRIEGLHIVSL

YNVKKVPEGIEFLRSLKKLWLLHLHKDFNTYWESNGMHEKMAHANTAKTLILSAGCFPVLKTLVLMHMSDVNKVE

VEAEALPHIEGLHIVKKVSEGIEFLRSLKKLWLLNLHKDFNTYSKRNGMHEKMVCGQEVCRI

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	160	460	3.1e-75
NB-ARC [Pfam ls]	160	460	8.7e-76
LRR [Pfam ls]	575	597	7.2

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	575	597	0.36
LRR [sensitive, ls]	575	597	7.2
LRR [sensitive, ls]	598	620	1.4
LRR [sensitive, ls]	598	620	29
LRR [sensitive, ls]	621	644	0.55
LRR [sensitive, ls]	621	644	11
LRR [sensitive, ls]	743	766	1.9
LRR [sensitive, ls]	743	766	38

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	22	709	5e-60
I2 [L. esculentum]	31	682	3e-56
RPM1 [A. thaliana]	38	849	2e-95
Pi-ta [Oryza sativa]	63	710	2e-39
Pib [Oryza sativa].	70	319	6e-12
RPS2 [A. thaliana]	161	833	3e-39
N [N. glutinosa]	163	852	1e-10
L6 [L. usitatissimum]	170	511	1e-17
M [L. usitatissimum]	170	511	3e-14
Pib [Oryza sativa].	172	659	8e-50
Xa1 [Oryza sativa]	198	706	1e-37

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	43	64

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5548.m00154

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)