Report for 5566.m00162

 > 5566.m00162, length: 760, copies: 1 

MSLGAKSPVEISEMDDNDFLDLFMHYALDGVRVLDSQKLQKLHSIGRGIANKLRRLPVAARRVGDRLCKNLDASS

WQKIRDNEVPCTDIIQEQWRSYQKLNEQVRRCFAYCSMFPRNYRFKRNALVKLWMAEGFIKTSNGQKMEDIGEKY

FEDLKSWSFIKSEGKLADSDDEWFTIPDMLHELAEMVAGNDCLRVLGDEVEVFRSDVRHLFITSSNAMKYKHDIY

KMKKLRTLIISADGSRGITEQVLERMLKELKKLRVVQTYLDQDRVIVPESACGLKHLRFLSILGSHIRQVKLPTE

FGKLYHLQNLEFPLSYYLDLNCSNVKRMSSQLINLRSISSPYVDLGIPYVEDLKQLQELSHFKVRKEEAYRLKQL

MKQNNLRGSLKISGLESVESKEKALEANLTEKKCLTTLSLEWHAYHASYVKADKDLQLQVEILDGLQPPEQLTCL

NICHYLGRTTPSWLSREHGGVSNLQFLELRECYNLETLPEIAKLFTDLRKLRLNVLPNLTRLPRLPGMLKSLEIS

GCRRLEVTSMDDQRLFPASLECLHLTGCTVEDTVLRDSLRGCTVLGSLKLSQIDSFTEIPSETMRSLVRLRDLYI

GGCKQLVRLEGLNHLDSLEHLTIIKCPSLMDLKVAGKAHAVPRLTVDDMSLVPKLLSRGAYPSLKWLALEHSVEL

RGEWILEHLTSLAYLGFTSCHWNSLPNNLENLTALKELYFDFCGSIRSLPKLPKSLLYFRSIGCKFLFLGSNWDD

IARIPYRRIL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	96	140	5.4e-14
LRR [Pfam ls]	473	495	0.94
LRR [Pfam ls]	544	568	6.9

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	473	495	0.046
LRR [sensitive, ls]	473	495	0.94
LRR [sensitive, ls]	497	519	5.3
LRR [sensitive, ls]	497	519	110
LRR [sensitive, ls]	544	568	0.34
LRR [sensitive, ls]	544	568	6.9
LRR [sensitive, ls]	594	616	0.96
LRR [sensitive, ls]	594	616	19
LRR [sensitive, ls]	709	732	1.3
LRR [sensitive, ls]	709	732	27

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa1 [Oryza sativa]	2	727	1e-46
RPM1 [A. thaliana]	10	550	7e-16
Pib [Oryza sativa].	17	308	3e-11
I2 [L. esculentum]	22	745	7e-44
Xa1 [Oryza sativa]	470	739	7e-13

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5566.m00162

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)