Report for 5570.m00108

 > 5570.m00108, length: 1464, copies: 1 

MAVLSWQAKCSPVETSSSQATASLRSASSKQAASFDHPTDVFLPGVKIGQNKITGQKYSFTSKKNSENPALGLYC

MELDPSGSRQYYDMLCNSSIVYFSTGEWNGRYFNSVPEMSSNVFLDSKFVDNDEKDYFTYTPFDNTIVMASSSSS

TSTTNPLFSVHISEKLTKQNHAVWSAQVLAAVRGARLEGYLTGKAAAPAAQIERKEGDKGEKITLVDNPAYEEWF

AADQQVLGFLLSSLSRDILGQVAGSRSAAQAWRAIGEMFSSQSRARTLNVRLSLQTTSKGTMPISEYVGKMKAYA

DEVAATGKPLDEEELIAYIVNGLDGDYDPFVSSLGMRVEHISITELYAQLLNFENRLKMRQSGASAHAANRVNAG

RDYSIPLAAVHRRSGEQVSGTSAFDVLHREKAAISVFVPRGGSTGGFGGGNPARGRGDGAGGRGRGNPGAGRGLG

GNQQQRIDTRPVCQVCYKRGHVANYVPDERHVAAASYAYGVDTTWYIDIRATDHLTSELDKLTTREKYKGTDQIH

TASGAVVHFILKMCFMFLKRQKNLISASKLAEDNYAFLEIYSKYFLVKDQATKRTILKGWRHKGLYPLPASTTKQ

VHSVAPSFRRWHSRLGHPSTPIVAKVISQNKLPCLSESREESVCDACQKAKSHQLPYSKSFSVSEHPLDLVFSDV

WGPAPDSVGGKKYYVSFNDDYSRLMYGVLLPILWGARNIIHLHKGFKCLDICTGRVYISRDVIFDKNVFPFANLH

SNAGARLRSEISLLPSSLVPYRTDQGGEQGSDHVFNNAPANSVSGENAATGNDAASDGEDSGILGSVDEEMPHGP

EPEQDQIDGTEQDHVDGTATDSPDASAGHSPAHSGHMSPQGALDHVQLSTDHHGDAGGSTGAESHHNEAIDQYDV

TQDAAPTGATRPKTRLQSGEGKNVIGCKWVYKAPRAWYSRLSTKLQELGFKPSKANTSLFFYNKENISIFVLIYV

DDIIVASSVPSATAALLKDLTKDFALKDLGELHFFLGIEVNKTDQGIVLTQEKYAKDVLKRVDWASCIDDRRSTG

GFAVYIGSNLVSWSARKQATVSRSSTEAEYKALANVIAEIMWIQTLLQEISIEAPRAAKGFSVKSPRDWELDDRR

EGCTKNIPLGCSSNESTTGLTDKFFPIPSVRLPYDAHSISMETVASAHECIQFLGLPPAIDDLEQKECATKNFSE

KLGGGGFGSIFKGILSDSNTIAVKMLDGDIRMLVYEHMVNRSLDAHLFRNDGTILNWSTRYQIAVGVAKGLSYLH

ESCHDCIIHCDIKPENILLDVSFVPKVADFGMAKLLGRDFSRVLTTMRGTVGYLVPEWISGVAITQKVDVYSYGM

VTVGNHIKECKSSADQTVYFPVQAARNLLKGDVESLVDHQLQGDINMEEVERACKVACWCIQDEDFNRPTVGDVV

QVLEGLVEPDMPQVTRLLESILGDVQEFKFDQISGISTE

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
Ser/Thr pkinase [Pfam fs]	1196	1227	0.008
Ser/Thr pkinase [Pfam ls]	1196	1430	3e-14
Ser/Thr pkinase [Pfam fs]	1232	1351	2.3e-28

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
Retrotransposon gag protein [fs]	284	325	6.5e-05
Integrase core domain [fs]	663	706	3.1e-07

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pto [L. esculentum]	1188	1429	2e-31
FLS2 [A.thaliana]	1189	1425	2e-18
Rpg1 [Hordeum vulgare]	1192	1452	2e-18
Rpg1 [Hordeum vulgare]	1231	1462	5e-18

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5570.m00108

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)