Report for 5580.m00120

 > 5580.m00120, length: 1042, copies: 1 

MVEKLYAESAQEQGKLLCIESLLQDLHTLFRMVHRKISGINDSALLMISANNEQYHQLLQRLWSLTLDIDDMLNK

VSCYLTKTRVLSIQVHSSFILRRLPFRRRIVHKIKQSIVELQECYAQTYRIRFPAKHRDISTPMVCQGAHSIRPE

GILGREKEVDDVLTMMQADHGKAGLSVLPITGMAGIGKTTLAQLVFSHPWAVKTFGDDRIWVVVSSSFDDMIILS

RLAEFLNTRQCNTVDSESLQCLVKQRLCGRKFLIVLDDVWGQNLQKWKLLIEVLESAKSGSKMIVTSRVPDVVTM

TNSLRPYTLKRLLPIDSSNLLTQWMQNSAELPPRLIPIRKMIADTCCGVPSLLLSASNKLKSIRKTEVAWQHVLS

RFDLVFYADPLLLDATYVSYQQLPSNIQQCFLYCSLFPVHSFTPEQLTGMFVADDLIKLSSSKSDMHMYFSKIMT

EHYYDVMQKPRHKAYAIYKMHPGMQLLAQMISRGFHLAIDARKELVWPVENAKKSARCLSLLVDSKTTELPTELF

EMGNLRTLILLRDEKMLLSDKKCSITDIPEEFCKCLIDMRVLHMQSCRIKRVPKLIGMLKKLAYLNLSHNDIEII

PDSICNLQFLKNFNLSRTEIAELPESVGKMQALQVLDLSHCEKLLHLHESVSNLVNLQILNLEGCHYLAILPRSM

KNLKSLAYLNVLECPLLTQMPCQMNQLRNLEILPRYIAAENHEHTISELRPLVSLKELSICNMENASFDDARNVI

LQKKNRLVSLALSWTGSCTDPMISSKAQQILELLKPNRGLKVLCIFSCPAKKLPSWITSMPAYLKSLTEIKLVNL

ACECLPPLGQLPLLKIVELSGINAVTRVGDEFYGDDGTFASLEKLSFFHMRNLEIWLPSQREAIFPNLQELTITQ

CPKFRAVHVKLPVVKSLIMLLNNDKLIGSRGALEGFSQNLKSLSVSLCDGLLECSECEGLRELRGIEELHISRCT

ELISLPHGMQHLSFLRTLTITECTNLETFPEWLKNFTSLRSLHISSCPKLHIPKSLNNLSNLEISLE

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	136	437	4.4e-25
NB-ARC [Pfam fs]	150	293	5.1e-22
NB-ARC [Pfam fs]	387	437	1.4e-06
LRR [Pfam ls]	586	608	0.028
LRR [Pfam ls]	632	655	2.9
LRR [Pfam ls]	656	679	8.8
LRR [Pfam ls]	989	1012	4.4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	563	585	1.5
LRR [sensitive, ls]	563	585	29
LRR [sensitive, ls]	586	608	0.0014
LRR [sensitive, ls]	586	608	0.028
LRR [sensitive, ls]	609	631	1.4
LRR [sensitive, ls]	609	631	29
LRR [sensitive, ls]	632	655	0.14
LRR [sensitive, ls]	632	655	2.9
LRR [sensitive, ls]	656	679	0.44
LRR [sensitive, ls]	656	679	8.8
LRR [sensitive, ls]	816	837	2
LRR [sensitive, ls]	816	837	40
LRR [sensitive, ls]	892	912	3.8
LRR [sensitive, ls]	892	912	77
LRR [sensitive, ls]	965	988	0.47
LRR [sensitive, ls]	965	988	9.5
LRR [sensitive, ls]	989	1012	0.22
LRR [sensitive, ls]	989	1012	4.4
LRR [sensitive, ls]	1013	1038	0.97
LRR [sensitive, ls]	1013	1038	20

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	67	744	3e-24
Xa1 [Oryza sativa]	105	1039	3e-38
M [L. usitatissimum]	147	1034	9e-15
RPP5 [A. thaliana]	150	1038	3e-14
RPS2 [A. thaliana]	150	912	8e-22
I2 [L. esculentum]	152	1009	1e-63
Pib [Oryza sativa].	152	845	3e-18
RPM1 [A. thaliana]	177	636	2e-21
RPP5 [A. thaliana]	571	1039	3e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5580.m00120

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)