Report for 5604.m00167

 > 5604.m00167, length: 1546, copies: 1 

MERHGCSRHRHCSFVLLIVVVVVAYLLVGVVPALQASVIAEDDGRALMQFQSLITEDPYGALATWGGSSGSNHSA

SPATPCGWCDLRGLGLGGAIVAQSSLSSLTYLRWLDLSQNRLCGGVPTPLPLSLEYLNLSCNALQGTVSSELGSL

RRLRVLVLDTNNLTGGIPASLGNLTSLTDLALTGNHLSSHIPSALGNLRALTSLYLNDNMLEGSIPLSVFNLLSV

ALSRQSIHHQTRARKEEIKSSGPSTTARPRRERRDNLRVKGKDWILSLILLAEISLQVDAMEKQAGGFEKMLEGI

QNAIGAVAVKQDETQAVVLQMDKAMASWRPQVDAAVKGLQSEMGELKKQVEILEKLRGELGNSSNMLQAGAISTR

KQGDDNDQRPPLLPTPESFVASTLAGDSGSNGHRVAINNRGKATGVIIPPVPPQVTGTTNSPFSHRFACDSLHRD

EVGGSEDRGYNHRVPKLDFPQFDGVDPQNWRMRCEHYFGVYGTHPILWVRVATIYFTGRAASWLRSSKAHLRFSE

WSNFCLAVDRKFDRDRHQMLIRQIEQIKQTGTLTIVHRFTEGLRFDIRHAVMMQRPRDLETALAIACLQEEWTET

QKPKEFRKLGDHVLRIKGAYPLPLPPSKVSESSAGAGKSSSEPVKTTAIADRMRALKAHRRAQGLCYLCAEKWSL

SHKCSSSVQLNAVQEVFALLQQNDSDSGDSPGEDTEPHSLFSLSVHAIQVQGHHFCSALKVLPLQSYDMILGMDW

LERYSPMDIDWQQKTIRFTLDGQLITLCGVLHQLYQSGSIEGLVQLYTLDSESSSDLPIPDNIQQLLQSFADVFQ

EPQGLPPVREYDHTIPLIPGAQPVNVRPYRYTPLQKDEIERQVADILDRGIIKPSSSPFSSPVLLVKKKDGSWWF

CVDYRHLNAITVKNKYPLPIIDELLDELAGACWFSKLDLRSGYHRLPLRRIMGILSFITLLLHPIAFLSKALGPR

TQGLSTYEKESLAIILAVEHWRSYLQHDEFVIRTDHRSLAFLDNQRLSTTWQQKALTKLLGLRYRIVYKKGLENG

AADALSRQSPVDMVEILALSVSIPAWLQEKRIWIGNNKSLQQQILANLHTAAVGGHSGLRQSVHNFVQACDVCQR

AKSEHIKLPGLLQPLEVPDHAWQWKHWLGMAQFWYNSSYHSAIAMTPFEALFGHKPSYFGLTITAIDAPMSLASW

LTDRNNMSALIHHHLLRAQQRMKHQADLHRSERIFTVGDWVFLKLQPYVQQSVMTRANRKLSFKFYGPFQVLQRV

GSVAYKLDLPSTSMIHPVVHVSQLKKALAPAEKVQASLPTLDSEFGPLAVPHRILERRLRQRGAKLIEQVQVEWK

GTSSPAITWENLEELRHKFPAAPAWGQAGSQGGRNVTPEHSSSDSGAEGRIKSSGPSTTARPRRERRDNPRVKGK

DWILSLILLAEISVRNKHLVMQFNNLTGTLPPCAGNRLPRLKVLSVDRNQLHGAIPVSLCNSSKLEVIQMMKNSF

SGVIPDCLGAHLQNLWELTLDDNQLEANSDSDWRFLDSLTNCSNLK

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	128	151	0.018
LRR [Pfam ls]	152	175	0.054
LRR [Pfam ls]	176	199	0.19
LRR [Pfam ls]	200	224	0.043

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	106	126	0.31
LRR [sensitive, ls]	106	126	7
LRR [sensitive, ls]	128	151	0.00082
LRR [sensitive, ls]	128	151	0.018
LRR [sensitive, ls]	152	175	0.0024
LRR [sensitive, ls]	152	175	0.054
LRR [sensitive, ls]	176	199	0.0084
LRR [sensitive, ls]	176	199	0.19
LRR [sensitive, ls]	200	224	0.0019
LRR [sensitive, ls]	200	224	0.043
Retrotransposon gag protein [fs]	500	560	3e-08
Reverse transcriptase (RNA-dependent DNA polymerase) [fs]	882	955	2.7e-16
Integrase core domain [fs]	1149	1177	0.0014
LRR [sensitive, ls]	1440	1464	3.7
LRR [sensitive, ls]	1440	1464	83
LRR [sensitive, ls]	1465	1488	0.39
LRR [sensitive, ls]	1465	1488	8.8
LRR [sensitive, ls]	1489	1513	1.6
LRR [sensitive, ls]	1489	1513	36
LRR [sensitive, ls]	1514	1540	0.72
LRR [sensitive, ls]	1514	1540	16

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	15	227	3e-25
FLS2 [A.thaliana]	19	225	2e-17
CLV2 [A. thaliana]	69	227	2e-11
FLS2 [A.thaliana]	83	382	1e-13
Cf-9 [L. pimpinellifolium]	85	219	4e-11
FLS2 [A.thaliana]	85	227	3e-13
Xa21 [O. sativa]	85	222	2e-16
FLS2 [A.thaliana]	91	236	5e-16
Xa21 [O. sativa]	92	233	1e-13
FLS2 [A.thaliana]	99	245	1e-13
FLS2 [A.thaliana]	99	229	2e-13
FLS2 [A.thaliana]	101	243	3e-15
Xa21 [O. sativa]	1449	1546	6e-16

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	331	360

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	13	35	in -> out

Report for 5604.m00167

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)