Report for 5604.m00189

 > 5604.m00189, length: 1008, copies: 2 

MDIFRAVESASVKIFDLIKTEYELRNKMENKIKSISLVMNMMNVFISSSSRSKAEAFGEKWVMQLQELLYDMEDA

LDLMGPKTKVSFPKRALRTVGLMDPRPQHILLIQELDERLKILLELWDQFRDQSGEDTPATTKPDETAGPRVPLG

CRLAPVGIQHHKDDLIDLLQHVDGQPKQLRVISIVGFRGVGKTTLANEVYCHDDGSDGEPFDCKAFVRVAWSAPL

AAESKDDAARLLKETVYQLHCASADINDNTDIMTLRETICKFLEDKRYLIVIDDVRKDEVWAEIEGAFPKESSSR

IIVTTSVQSVAKKCSLGGFMYRLEGLNEVDSDKLLWQLVGCDRNELPQDVQSHSVDIVRKCDGLPLALTGVAEYV

RLKLEDLRRGELRCSAIVRDLGNNLAGRLHNAAFKAAHATLKECYEGLYSHDLKTCLLSVSMFPKNYSIRRKSLV

RRWMAEQLVPVPFDGQEHASTVADKNFEKLVDRIMIQRADDEEDPAPAVVPGAVKNKCRVQGVLLDFLHNKSVSS

KFARLIQNGEHLQTTSGDNNLGPRRLAIVYDPKANRAGGGNSNKAKLAEMVEGLDLSHVRSLTAAGTELSDFKLK

RCKVLRVLDLDGCTGITGGVLRRICKLKVLRYLSLRGTTIDACGLPAEIAEMRFLETLDVRDIVIVVRGSKSKAE

EDHVATITLPCNVLCLPYLKYLFGAFELPRDIAGPARGGLALWPKAARASGGAAAQACKLHTLAGIFIGGGDREG

HQRLQNLFGLMHQDRLKKIKIWWNKKGVKGSKPKPTTAHTDLLVKFLENRCFTLESLSLDFGDESLDFLDFAPVN

AHLPCKIESVKLRGKLSKLPAFITANEHTMLDHALSKLYLSYTGLSCEALLLLQCLPNLKYLKLIEDNSNFTDGT

LTLNDARGFRSLRGLHVQAPKLPKVIIVVSGKDKTVAMKHLTTLQLLCKDISGFQAAHIDYFHRLEQVVLLKSSL

DINEKTAMEWEEARKKHMNRPRIDTIECRGQDQ

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	142	464	1.6e-24
NB-ARC [Pfam fs]	156	368	3e-21
NB-ARC [Pfam fs]	420	464	1.5e-06

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	1	660	1e-51
I2 [L. esculentum]	12	461	1e-20
RPS2 [A. thaliana]	141	661	1e-10
RPM1 [A. thaliana]	156	487	2e-19
Pib [Oryza sativa].	156	853	1e-33
Pi-ta [Oryza sativa]	173	659	3e-39
Xa1 [Oryza sativa]	179	660	1e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5604.m00189

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)