Report for 5616.m00113

 > 5616.m00113, length: 938, copies: 1 

MAESVVFGILCKIGSILGSHLTQALVSHLGKEVSVLIEVESIVKQIRSEFRLMQSFLQDGQEKESSSRQAETFLQ

EVQQIAFEVEDILDEFVYYFGRKETPSVELLKNFFRKSESVMPLRRIAAELKEVQNRLQNIRNLKLQYNIDLSEE

SASSIRYEDSKGHTLHHIMHNKKLVGFVNERQKLQELLMANERSCSIISIWGMGGSGKTTLVKTVSESKASKNRF

DCQIWVTVSQTYDITEIMRKIIQCALKDTCSADLGSMSSEGVVLMLQETLQGRTYMMVLDDVWDTNVWFSLEGFL

DESSIRSKVVITTRINDVASLAEDKRRLQLRGLDEAESWDLFCMWAFRHGEDQTCPPAMDRVARQIVGRCEGLPL

AITAVGNLLSFKRLDLMEWEKFYNQLNWELHNRLDNQGLSMVTRLLGLSYKHLPVHLKNCFLLCSIFPEDYMIRG

KRLCKLLVVEGLVEPRKNMTLEEIAMEYIEKLVDRCLLQVARRNKLGRVWELQMHDIIRELAISISEKEGFCMIH

NKAQRSVVECEPRRLSIHENSVRVQLSINASRVRSFYQFDIDCSSVSKVQWVSRTARYLKVLELGSVPIRKLPRD

IGNLFNLHYLGLRRTKIKQLPESIDRLQNLRTLDIFLTEIASLPRGVTRLRMLRHLIAGKAVASYFGLEDVFTGV

KVPNGLWRSLDLNVLTGISASSNLVEQLASFTQLRSLKLTDVKNIHYTKLFASIRKMQLLKNLLIGTANSDEYVS

LEALDPAPQNLEILFVKGRLHDRVIGSDLFEANRLTLMELTLENSRLSIDPLPSLSNFCNLTLLGLFNHYIGETL

LFQAEWFPKLHTLTLAELQNVSSIVIEKHSMPNLYNFALICLTNLEDLPEGMEFLGSVEELSLVGMHQKFMEHVQ

GSSNVKVKHIPVVDYFDQTKGRWDRLSPLYFEDEGTKN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	159	468	3.4e-74
NB-ARC [Pfam ls]	159	468	9.3e-75
LRR [Pfam ls]	606	628	4.4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	135	164	3.7
LRR [sensitive, ls]	135	164	83
LRR [sensitive, ls]	583	605	1.2
LRR [sensitive, ls]	583	605	27
LRR [sensitive, ls]	606	628	0.19
LRR [sensitive, ls]	606	628	4.4
LRR [sensitive, ls]	629	651	1.2
LRR [sensitive, ls]	629	651	26
LRR [sensitive, ls]	689	710	2.1
LRR [sensitive, ls]	689	710	48
LRR [sensitive, ls]	786	812	1.2
LRR [sensitive, ls]	786	812	26

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	5	755	1e-48
RPM1 [A. thaliana]	25	919	1e-113
I2 [L. esculentum]	42	692	6e-58
RPS2 [A. thaliana]	43	874	4e-35
Pib [Oryza sativa].	52	363	1e-17
Pi-ta [Oryza sativa]	70	634	2e-35
L6 [L. usitatissimum]	168	519	1e-14
M [L. usitatissimum]	168	562	2e-16
N [N. glutinosa]	172	511	2e-12
Pib [Oryza sativa].	173	888	4e-49
Xa1 [Oryza sativa]	176	870	5e-38

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	124	144

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5616.m00113

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)