Report for 5617.m00121

 > 5617.m00121, length: 901, copies: 1 

MAEALILVLLQKIATTLRGAAQKAISSQLGKEATLLFDVENSMREVECEFDVMQAFISQVDPYCTNNQVFQSWLK

HIRMVTFEVEDIVDEYAFLLGKMNGTESFLRKTLHKSKKLKVWYSVASRLRQVKSRVQNLTVMKERYGIKISDND

GTSSGCTANRQIHSSNSSYLNYGDDDDNAMVGQKDNVQRLTKHLNASGMDRSIITIHGMGGSGKTTLARSIYRKQ

DITKKFDCHAWITVSRNYQIEDLLMSIMDKLKIGHRTDINLEEMVQAIHTYLENKRYLIVLDDMWDRDSWSCFED

AFPRRSQGSKVIITTRNKEVAKLVELQGHIISLNTLLPIESWDLFCKKAFSKLPEAKCPEGLIKRAEEILEKCEG

LPLAIVAIGSLLSYRGIEEKEWASFYDQLNWQLTYNPELSRVSNVLSSSLNDLPTHLKNCFLYCGLFPEDRLIRR

KWIIRMWIAEGFVEDRGTETTLEEVAEDYLKELTQRSLIQVVERNEFGRPRRFKLHNMVREITWMMSKRQRFALI

CDDPDVTSLGDAVRRVPVHKGGQHFQPSASWQQLRSFLLFDKHVSISWICNASSNFRLLRVLCLRYSLLKDFPNA

IVGLFNLHYLDLSRTKVNKIPKSVARLKNLQTLHLRRTSVSELPCEITLLACLRHLSVSTDLYGTSFSGNVYGLR

SLHTLKEIKASKNLVQNLSYLTQLRSLSITNVLANHNRDLWSSIGKLKFLTRLAVSSRDDDEVLDLENFRAPQYL

EKFYLDAKLANNVLFPISGHFQNLKLLSMRFSHLVQDPLISLCKMANLVCLELNCAYDGEALRFCAEWFPKLKQL

SLEKLENLKSIDIIDGTMVNLTYLKLSQLWNLHVVPIGLTYLKMLHHLFAESMPDVFIRGLAREGFLNNSIIIEC

V

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	164	468	1.4e-89
NB-ARC [Pfam ls]	164	468	3.7e-90
LRR [Pfam ls]	606	628	0.4
LRR [Pfam ls]	629	651	4.4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	583	605	1.5
LRR [sensitive, ls]	583	605	34
LRR [sensitive, ls]	606	628	0.018
LRR [sensitive, ls]	606	628	0.4
LRR [sensitive, ls]	629	651	0.2
LRR [sensitive, ls]	629	651	4.4
LRR [sensitive, ls]	679	700	2.5
LRR [sensitive, ls]	679	700	57
LRR [sensitive, ls]	845	868	1.3
LRR [sensitive, ls]	845	868	30

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	25	895	1e-116
Mla1 [Hordeum vulgare].	29	704	4e-57
Pib [Oryza sativa].	52	323	4e-20
I2 [L. esculentum]	53	831	7e-57
Pi-ta [Oryza sativa]	73	656	1e-47
M [L. usitatissimum]	125	442	7e-14
Pib [Oryza sativa].	173	873	4e-59
L6 [L. usitatissimum]	176	520	7e-14
RPS2 [A. thaliana]	179	836	2e-37
N [N. glutinosa]	180	442	3e-12
Xa1 [Oryza sativa]	183	707	8e-35

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5617.m00121

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)