Report for 5641.m00088

 > 5641.m00088, length: 575, copies: 1 

AFNISSNQLTGPIPRELARCTKLQRLDLSKNSLTGVIPQELGTLVNLEQLKLSDNSLNGTVPSSFGGLSRLTELQ

MGGNRLSGQLPVELGQLTALQIALNVSYNMLSGEIPTQLGNLHMLEFLYLNNNELEGEVPSSFGELSSLLECNLS

YNNLAGPLPSTTLFQHMDSSNFLGNNGLCGIKGKSCSGLSGSAYASREAAVQKKRLLREKIISISSIVIAFVSLV

LIAVVCWSLKSKIPDLVSNEERKTGFSGPHYFLKERITFQELMKVTDSFSESAVIGRGACGTVYKAIMPDGRRVA

VKKLKCQGEGSNVDRSFRAEITTLGNVRHRNIVKLYGFCSNQDCNLILYEYMANGSLGELLHGSKDVCLLDWDTR

YRIALGAAEGLRYLHSDCKPKVIHRDIKSNNILLDEMMEAHVGDFGLAKLIDISNSRTMSAIAGSYGYIAPEYAF

TMKVTEKCDIYSFGVVLLELVTGQSPIQPLEQGGDLVNLVRRMTNSSTTNSEIFDSRLNLNSRRVLEEISLVLKI

ALFCTSESPLDRPSMREVISMLMDARASAYDSFSSPASEAPIEDDSSLKH

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	22	45	0.025
LRR [Pfam ls]	46	69	0.013
LRR [Pfam ls]	70	93	0.24
LRR [Pfam ls]	119	142	0.17
Ser/Thr pkinase [Pfam fs]	274	476	3.2e-50
Ser/Thr pkinase [Pfam ls]	274	549	3.4e-48

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	22	45	0.0012
LRR [sensitive, ls]	22	45	0.025
LRR [sensitive, ls]	46	69	0.00062
LRR [sensitive, ls]	46	69	0.013
LRR [sensitive, ls]	70	93	0.011
LRR [sensitive, ls]	70	93	0.24
LRR [sensitive, ls]	119	142	0.0083
LRR [sensitive, ls]	119	142	0.17

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Cf-9 [L. pimpinellifolium]	1	180	1e-13
CLV2 [A. thaliana]	1	163	1e-16
CLV2 [A. thaliana]	1	159	2e-13
FLS2 [A.thaliana]	1	159	1e-23
Xa21 [O. sativa]	1	192	1e-25
FLS2 [A.thaliana]	2	564	6e-84
FLS2 [A.thaliana]	2	161	6e-25
Cf-9 [L. pimpinellifolium]	3	188	2e-17
Cf-9 [L. pimpinellifolium]	3	198	6e-16
Cf-9 [L. pimpinellifolium]	3	161	8e-16
Cf-9 [L. pimpinellifolium]	3	174	3e-12
Cf-9 [L. pimpinellifolium]	3	176	4e-12
CLV2 [A. thaliana]	3	220	4e-22
CLV2 [A. thaliana]	3	180	2e-19
CLV2 [A. thaliana]	3	156	5e-11
FLS2 [A.thaliana]	3	161	2e-24
FLS2 [A.thaliana]	3	161	8e-22
FLS2 [A.thaliana]	3	159	1e-21
Xa21 [O. sativa]	3	161	1e-10
Xa21 [O. sativa]	3	362	2e-41
Cf-9 [L. pimpinellifolium]	4	158	2e-15
FLS2 [A.thaliana]	4	161	5e-24
FLS2 [A.thaliana]	4	173	1e-18
Xa21 [O. sativa]	4	181	2e-27
Xa21 [O. sativa]	4	169	3e-24
Xa21 [O. sativa]	4	159	1e-23
FLS2 [A.thaliana]	7	196	6e-25
FLS2 [A.thaliana]	7	159	9e-21
Xa21 [O. sativa]	7	161	5e-20
Cf-9 [L. pimpinellifolium]	21	170	1e-19
CLV2 [A. thaliana]	22	282	1e-11
Xa21 [O. sativa]	22	159	1e-23
Pto [L. esculentum]	257	544	7e-40
Rpg1 [Hordeum vulgare]	264	547	6e-41
Rpg1 [Hordeum vulgare]	267	547	2e-30

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	211	233	in -> out

Report for 5641.m00088

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)