Report for 5646.m00173

 > 5646.m00173, length: 1003, copies: 1 

MVEIVTGAISTLLPKLGEVLRKEYQLHKTVRGEIMFLMAELERMQAAILEISESDEPNKLVKLWVRDVRELSYDI

EDTIDSFMVHFDKHRSFRGFIDRSLNLLTKFKIRHKIGANIRDIKSHIKEVSELRDKYKVDGVTVARPVGHQTVD

SLRLQSALYKNVSELVGTKKKTDDLVSRLMEMHDDVESKRNLKVVSIVGFGGLGKTTLASVVYHKLKLEFDCGAF

VSISLHPNMVGVFKNMLRQLDEKTYLNINGETWEEVQLIDELRKFLQNKRYIVVIDDIWSKSVWKTIKYVLVDNQ

LGSRIITTTRAVDVAEQVGGAYKLEPLSPDDSIKLFNQIIFHSEDKCHPYHLSEVSQKILKKCGGIPLAIITIAS

MLASKKGNQHEYWYKVYHSMGSGLEDSPDLRNMRRILSISYYDLPPHLKTCLLYLSSYPEDYLSTRETLIWKWVG

EGFVETKQGSSFYQVGGEYIYELMNKGMIQPACDIVNDYPEYYRVHDMVLDLITSLSNEEHFLTRLDGHPSLSLP

KKIRRLSIQTNEEEYVKQLATISLCHLRSLTVCGQGLSSLLPTLPSMCPFLRVLDFSGCDKVENQHCKDICKLFH

LRYLRLYGTSISELPKEIANLQFLQVLDISITNIKELPPTFIQLKQLVYLHFPNMMRLPDGLGSLNRLQEIPNVI

TIDSPTMLHDLGCLSKLRRLTIYFDKWDESYEKPFIQCLSNLVSLELLEVDGTLGSTCGSLSPGPQRLQSIDMSF

CTLTAFPGWMSSLCSLSSLHLILLTLGEDELQVLGSIPHLNDLYISISVNKAIHDKNKRLVIGKGCPFLCLTQFS

LASSSMYVGFAQGAMQKVRDLSLYFGVSETMGQFGDFDFGLENLSSLEHVDVWMRCFGSKTGEADDAEIAIKRSL

QLNPNNPTMELEKIYRDSVKSTSRYDDRKRFGIVRYRYLEVSTKTRNTRAKRKASRRERTGSSRAKRFPKNLIAA

FSRCRTSKAEVPETCSPDRWCTPASEME

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	148	459	1.1e-71
NB-ARC [Pfam ls]	148	459	3.1e-72
LRR [Pfam ls]	600	622	0.013
LRR [Pfam ls]	623	645	0.48

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	551	570	4.2
LRR [sensitive, ls]	551	570	46
LRR [sensitive, ls]	575	599	5.8
LRR [sensitive, ls]	575	599	63
LRR [sensitive, ls]	600	622	0.0012
LRR [sensitive, ls]	600	622	0.013
LRR [sensitive, ls]	623	645	0.043
LRR [sensitive, ls]	623	645	0.48
LRR [sensitive, ls]	742	764	0.77
LRR [sensitive, ls]	742	764	8.4

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	2	912	1e-159
I2 [L. esculentum]	5	795	3e-50
RPM1 [A. thaliana]	19	790	1e-66
N [N. glutinosa]	22	741	5e-11
Pi-ta [Oryza sativa]	26	695	2e-70
Pib [Oryza sativa].	44	356	4e-18
RPS2 [A. thaliana]	117	639	9e-27
Pib [Oryza sativa].	163	907	3e-63
Xa1 [Oryza sativa]	192	750	1e-34

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5646.m00173

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)