Report for 5693.m00135

 > 5693.m00135, length: 967, copies: 1 

MASNHHSQSIFSAVLCSFGNCLQLNIAYAFKPEEVLVKLTEFNRRLEARSDDIKLMISMAGSKQQTCKHEVLDWL

QTVELARTEVDAILQDYSKRSKHLISNFNISRRASDKLEELVDLYDRGSFEVVSVDGPLPSIEEKPIREKLVGMH

LNVMKVLSYLLDAKIRLIGIWGMGGVGKTIFLKVINNQFLGVVDNMPFDHIMCVAAARGCVLENLQMNIAEKLGL

LSKQGDSIESRAATIFNHLKNKNFLLLLDDLWEHVDLLEVGIPPPNESKIQKVVFATRSEEICCVMEADKRIKLE

CLQPDEAWELFKYSATEETICADMPIENVAKRVCAKCRGLPLALITVGRSMRAKRTWREWENALSTFDESTQLLE

ASEMKVINPILSTLRISYDNLENDQLKECFLVCLLWPEGYSIWTVDLVNCWIGLGLVPVGRTINDSHNIGLSRIE

KLKRLCLLEEGDIKQSEVRLHDIIRDMALWIASDYKGKKDSWLLKAGHRLRNVLSCEVDFKRWKGATRISLMCNF

LDSLPSEPISSDLSVLVLQQNFHLKDIPPSLCASMAALRYLDLSWTQIEQLPREVCSLVNLQCLNLADSHIACLP

ENFGDLKNLRFLNLSYTNHLRNIPSGVISSLSMLKILYLYQSKYSGFELELSKNITGRNDEFSLGELRCFHTGLS

LGITVRSVGALRTLSLLPDAYVHLLGVEQLEGESTVSLKLQSTVTVVNFRMCLGVEELSIELDNGQDPEKSIPQL

EYLTFWRLPKLSSVKIGVELLYIRMLCIVENNGLGDITWVLKLPQLEHLDLSFCSKLNSVLANAENGERRDASRV

HCLSRLRILQLNHLPSLESICTFKLVCPCLEYIDVFGCPLLKELPFQFQPDNGGFARLKQIRGEEQWWNSLRWDG

DATRNMLLPFYKVFDKNLETFEPALGTNPFVQASGSFFAHRKPMMRTAIQFSSYLSLLFGAQVASTN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	129	437	2.7e-59
NB-ARC [Pfam ls]	129	437	1.8e-59
LRR [Pfam ls]	537	561	4.8
LRR [Pfam ls]	562	584	1.9
LRR [Pfam ls]	585	607	0.26
LRR [Pfam ls]	608	632	0.013

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	537	561	0.19
LRR [sensitive, ls]	537	561	4.8
LRR [sensitive, ls]	562	584	0.074
LRR [sensitive, ls]	562	584	1.9
LRR [sensitive, ls]	585	607	0.01
LRR [sensitive, ls]	585	607	0.26
LRR [sensitive, ls]	608	632	0.00052
LRR [sensitive, ls]	608	632	0.013
LRR [sensitive, ls]	795	819	0.67
LRR [sensitive, ls]	795	819	17
LRR [sensitive, ls]	854	877	1.1
LRR [sensitive, ls]	854	877	28

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	44	676	5e-37
RPS2 [A. thaliana]	46	899	1e-109
Mla1 [Hordeum vulgare].	94	637	4e-24
Pi-ta [Oryza sativa]	137	432	3e-15
L6 [L. usitatissimum]	144	869	4e-13
N [N. glutinosa]	144	634	1e-12
Pib [Oryza sativa].	145	590	7e-16
RPM1 [A. thaliana]	146	816	4e-27
Xa1 [Oryza sativa]	165	865	6e-20

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5693.m00135

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)