Report for 5693.m00139

 > 5693.m00139, length: 895, copies: 1 

MGSIAQIAVGATTIMCRIGGWLLPHLTYPFKTAQNVKKLTELRRKLQARRDDIELMIENAERKQKVCPHVVRDWM

EDAEHAIGEADEIKTEYDNRTPCFQRLTPNLNVARSYRISKRARKSMIKLKQVYAGGEFSEGEFPCKPPPKVEHR

PIGTSVVIGMEHYLDMVMCYLREKDKNIPVIGIWGMGGVGKTTLLKLINNEFLGTVDGLHFDLVICVTASRSCRP

ENLQINLLEKLGLELRMDTGRESRRAAIFDYLWNKNFLLLLDDLWEKISLEEIGVPPPGRDKIHKVVLATRSEQV

CAEMEARTTIKVECLPQDDAWKLFLSNVTEATINLDMRIQRLAREVCDRCKGLPLALVSVGRTMSIRRQWQEWEA

ALRSLNKSYQLFEKSGLKKENAILATLRLTYDNLSSDHLRECFLACAIWPQDYSIWNIDLVNCWIGLGLIPIGRA

LCQSHNDGYSVIWQLKRVCLLEEGDIGHTEVRLHDTIRDMALWITSEKGWLMQAGLGMRRVTDIERWASATTISL

MCNFVESLPSVLPSCPNLSVLVLQQNFHFSEILPTFFQSMSALTYLDLSWTQFEYLPREICHLVNLQCLNLADSF

IASLPEKFGDLKQLRILNLSFTNHLMNIPYGVISRLSMLKVLYLYQSKYTGFEKEFDGSCANGKQINEFSLTELD

CFDNGLALGITVRTSLALKKLSELPDINVHHLGVEQLQGESSVSLKLKSSMSVVNFKMCLGIETLSIEYVDDSYP

EKAIPYLEFLTFWRLPKLSKVSLGHDLLYIRMLNIVENNGLTDLTWIIKLPYLEHLDLSFCSMLKCIIADTDDGE

ESEIMADNNRVHAFPKLRILQLNYLPNLEIFSRLKLESPCLEYMDVFGCPLLQEFPLQATHEGITHLKRI

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	142	450	1.3e-67
NB-ARC [Pfam fs]	154	450	6.1e-67
LRR [Pfam ls]	542	566	3.5
LRR [Pfam ls]	567	589	2.5
LRR [Pfam ls]	590	612	0.31
LRR [Pfam ls]	613	637	1.9

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	519	541	1.9
LRR [sensitive, ls]	519	541	50
LRR [sensitive, ls]	542	566	0.14
LRR [sensitive, ls]	542	566	3.5
LRR [sensitive, ls]	567	589	0.098
LRR [sensitive, ls]	567	589	2.5
LRR [sensitive, ls]	590	612	0.012
LRR [sensitive, ls]	590	612	0.31
LRR [sensitive, ls]	613	637	0.076
LRR [sensitive, ls]	613	637	1.9
LRR [sensitive, ls]	802	826	1
LRR [sensitive, ls]	802	826	26

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPS2 [A. thaliana]	1	883	1e-104
I2 [L. esculentum]	37	662	1e-33
Pib [Oryza sativa].	75	652	2e-18
L6 [L. usitatissimum]	116	490	6e-14
M [L. usitatissimum]	154	879	4e-17
N [N. glutinosa]	157	708	9e-16
Pi-ta [Oryza sativa]	157	692	8e-15
Xa1 [Oryza sativa]	171	882	2e-19
Mla1 [Hordeum vulgare].	175	642	9e-22
RPM1 [A. thaliana]	180	617	7e-29

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	34	66

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5693.m00139

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)