Report for 5703.m00196

 > 5703.m00196, length: 654, copies: 1 

MDGWNEEELVEKIRCYLRGKIFLVILHDVRDKLIWDHIKLAFPDDCPAGSAIIVTTDNDDKVAQTFSPYKTFNPD

SSGHVLNFFLSRAISLLKHEREGWLRKILPCMLIYLEPQIYFMKMLLRFLYYNESGSSSQVYDALGNRGSLHDYW

PKKMVELCYFDMPNKYRSCMLYLSIFPPGYKIRRTSLVRRWIVEGLITDGQEMNALEQADNCFDSLVGRLLLCPS

DIDASGKVKTCTVLDLVHDVITDLVSGGYDTTFVVTVLAPRELARHLSIRFSTKLHISLSEPIDDILTFLKSLPS

SSLLCLLKVLDLDSCKGLKRRHLKNICGIYSLKYLSLRDTDVTELPKEMEKLIHLETLDIRQTNVSVFPRKSLVL

PRLKHLLSGHTVCPSEDIVRQQESFSAVHIPHRIGKMRNMEILSHIEVSHGGKELTAVSQLLKLRKLGVVFHDAD

KDGSDCLLHVIGTLHKCLRSLSVQIRSSSADDGSKGFDMSMMDATLPRFLESLTISGIRSGLPLWIEHLHKLTKV

TLRDTSLTESAIHVLGKLVGLRYLRLRHRSYIPGNLTISGREFRNLQFLLIENSDIVSIRFDEGAAPRLERLVWR

FTIMDSLVGIDHLLSFRELQLHGDCDTEKIGVILHDISAHPNDPSLKHIPAAGN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	5	56	1.2e-05
NB-ARC [Pfam fs]	167	202	7e-09
LRR [Pfam ls]	331	353	5.4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	331	353	0.5
LRR [sensitive, ls]	331	353	5.4
LRR [sensitive, ls]	354	377	1.1
LRR [sensitive, ls]	354	377	12
LRR [sensitive, ls]	521	544	1.8
LRR [sensitive, ls]	521	544	20
LRR [sensitive, ls]	570	593	3.7
LRR [sensitive, ls]	570	593	40

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pi-ta [Oryza sativa]	2	438	1e-22
I2 [L. esculentum]	5	381	1e-12
Pib [Oryza sativa].	6	621	6e-29
RPM1 [A. thaliana]	8	621	7e-27
Mla1 [Hordeum vulgare].	8	646	5e-27

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5703.m00196

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)