Report for 5705.m00163

 > 5705.m00163, length: 814, copies: 1 

MSKLELKKILKKIENIINDGHKILQLLNLPGHSNINKRQTVSDDSRIAVTTASPPFVVIGRDEDRDKILVLLHET

ENDGQHEPSRALSHSIIGIHGIPGSGKSTLAQYVCAHEKRGRQEKEAGHFDLIMWVHVSRNFNVDKIFSKMLEEA

TGNSCPQFNSLNTLEQKLEQALSRKRFLLVLDDVWYNKDDSQEELQKILFPLKVGALGSKILLTSRTRDALLALG

AAKCIPISELDDTVFLELFMHYALDSAGIDERDRMIFRAIGSDIAKKLKRSPLAARTVGGQLHMRPTIDFWQDAR

NQNLLNETMGALWWSYQHLDQQVRRCFAYCSIFPRRHRLERHELINLWVAEGFITTTEVGLEMEAVGRKYFEELV

SASFLQLGEKQAERFGASEYFTVHDLLHDLAEKVARNDCFKVENGWTGDLPGDVRHLYIESYNKTMITEKVLKMG

NLRTLIIYSGNTEIPTEEKIFERMFMRLRKLRVLSVKIITGSHVFSFPESIGQLRHLRHLCFRTTLIRQVLPNTI

AKLRYMHVLDFGVCGDLVFPSGEDMSNLINLQHIIATADLNCPNIGMLTSLQTLPLFPVKKEPGYELQQLRHLNK

LRGKLHIHGLGNVGSKEEALEAKLDGKERLKELVLVWDDESCSPEVEAEVLEGLCPPLELERLEITDYHGSSYPD

WMIGGHKGPKYLRELELSGCSRLGPAPELFEFFIHLRSLWLWKSSWNFLPDNLEQLMSLHELKMYFCLNIQSLPK

LPRSLEEFGLGACDDEFMRSCKTIGHPNWHKIQHIPRVTIALESTHSPHGSSSSSSIPVLYLSG

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	42	359	1.7e-35
NB-ARC [Pfam fs]	91	359	6.9e-37
LRR [Pfam ls]	733	756	5.1

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	506	529	3
LRR [sensitive, ls]	506	529	33
LRR [sensitive, ls]	686	709	0.84
LRR [sensitive, ls]	686	709	9.2
LRR [sensitive, ls]	733	756	0.47
LRR [sensitive, ls]	733	756	5.1

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	4	693	3e-61
RPS2 [A. thaliana]	22	579	4e-29
Xa1 [Oryza sativa]	33	748	1e-73
Pib [Oryza sativa].	52	561	4e-25
Mla1 [Hordeum vulgare].	58	602	8e-28
RPM1 [A. thaliana]	82	621	6e-28

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	159	179

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5705.m00163

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)