Report for 5707.m00165

 > 5707.m00165, length: 874, copies: 1 

MIKEYLTKRKFLLVLDNAYFTEENILEHMGIPHPRQQNIGSKVIVTTRTRRTAGAMWPHGPDTVIMPQPLTYEES

YNLLCTKIGKDVGSSYTLDLINNCYGIPLSVILLAGVLCDVPSQDTLNELVRNACVTLGSKVSVFHTMQRLVKFA

YHQLPDANARHCFLYCLLFPEDQGIPVNDLIRFWVMDGLITQSIEFHEASCIGKEILDVLLKRCMLYMDGNDHVR

MHDVIRETVSGFGKVNGYREQHDFKFGNPARKLECLAKLSTRVSLMSTEMEYLDGSVRCFWLTSLFLRGNRHMKY

ISEELFCHMEMLGILDLSFTGIKILPRSISCLTRLRILLLMGCDHLEEIQHIASLAQLEVLDASSCRSLRSIESG

SFGHMGMLGILDLSFTGIKILPRSISCLTRLRILLLMGCDHLEEIQHIASLAQLEVLNASSCRSLRSIESGSFDH

MMLLKLLDLSTTSIKCLPSLPASRELCHLLLQNCPYVGSENTIKSDGILSDTELIRFPYGVSKTGAIQNLQLGRI

GDLSDLMAMLWLPCGLTFQLCDMFNMGVLFSDNEDSKTFVYASDTYFFHSLKKDSPLWLNGFQRFQIIISPLKDD

QALDTDAQLMKADFIFRSSYFKTKHFTHSIDLDKFLEINGTFDVPSETEGILGHAELVSLKRLATTRSSDLNITS

MEAVRELWIENCSQLESLLSVDEIEILSAWGNLHNLWISNLERLSSLLEGVKDVVSFSCLKHLLIDCCPNLKWIF

PSMVCLPNLETMHVKFCDILERVFEDDSVLGDDALPRLQSLELWELPELSCICGGTLPSLKNLKVRSCAKLRKIP

VGVDENSPFVTTIGETFWWDCLIWDDESIKRWILFRKWGPMLPYLATEG

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	2	113	5.6e-08
NB-ARC [Pfam fs]	148	195	3.7e-11
LRR [Pfam ls]	357	381	0.18
LRR [Pfam ls]	428	452	0.7

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	286	310	3.6
LRR [sensitive, ls]	286	310	71
LRR [sensitive, ls]	311	333	2.2
LRR [sensitive, ls]	311	333	43
LRR [sensitive, ls]	334	356	2.8
LRR [sensitive, ls]	334	356	55
LRR [sensitive, ls]	357	381	0.0089
LRR [sensitive, ls]	357	381	0.18
LRR [sensitive, ls]	382	404	2.2
LRR [sensitive, ls]	382	404	43
LRR [sensitive, ls]	405	427	2.8
LRR [sensitive, ls]	405	427	55
LRR [sensitive, ls]	428	452	0.036
LRR [sensitive, ls]	428	452	0.7
LRR [sensitive, ls]	453	474	1.8
LRR [sensitive, ls]	453	474	35
LRR [sensitive, ls]	787	814	1.6
LRR [sensitive, ls]	787	814	31

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	2	370	2e-17
Mla1 [Hordeum vulgare].	2	470	2e-20
RPS2 [A. thaliana]	6	484	5e-32

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5707.m00165

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)