Report for 5712.m00109

 > 5712.m00109, length: 795, copies: 1 

MEAADTAIARWLSRHAPAHVLERVRRLRDEADARIGRLERRVEEVAAAQQQQQAAATALPPPAISLPFALPPPPP

PPKAMAMMAMDTPPTKGMAVGMEVELPFPDDEEDESMVGGGVRVGKEKVKEMVMSGGGGGWEARRNLRHGRQRQD

PRSPWKSSRITKSECSLTWFNTNPGMIICYFSDRVFFETISQSANLDTIKMKLWEQISGNLVLGAYNQIPEWQLK

LGPRDKGPVLVILDDVWSLSQLEELIFKFPGCKTLVVSRFKFPSLVTRTYEMELLDEEAALSVFCRAAFDQESVP

RTADKKLVRQVAAECRGLPLALKVIGASLRDQPPKIWLSAKNRLSRGETISDSHETKLLERMAASIECLSGKVRE

CFLDLGCFPEDKKIPLDVLINIWMEIHDLDEPDAFAILVELSNKNLLTLVNDAQNKAGDLYSSYHDFSVTQHDVL

RDLALHMSGRDALNNRRRLVMPRREESLPKDWQRNKDTPFEAQIVSIHTGEMKESDWFQMSFPKAEVLILNFASS

VYYLPPFIATMQNLKALVLINYGTISATLDNLSAFTTLSDLRSLWLEKITLPPLPKTTIPLKNLRKISLVLCELT

NSLRGSKVDLSMTFPRLSNLTIDHCIDLKELPSSICEISSLESISISNCHDLTELPYELGKLHCLSILRVYACPA

LWRLPPSVCSLKRLKYLDISQCVNLTDLPEELGHLTSLEKIDMRECSRLRSLPRSSSSLKSLGHVVCDEETALLW

REAEQVIPDLRVQDGGTIHSAILTCSVFMQLTLQQQPKLAEKIEP

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	137	406	2.5e-09
NB-ARC [Pfam fs]	274	399	2.7e-17
LRR [Pfam ls]	640	663	0.41
LRR [Pfam ls]	688	711	0.006

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	616	639	1.9
LRR [sensitive, ls]	616	639	42
LRR [sensitive, ls]	640	663	0.018
LRR [sensitive, ls]	640	663	0.41
LRR [sensitive, ls]	664	687	1.9
LRR [sensitive, ls]	664	687	44
LRR [sensitive, ls]	688	711	0.00027
LRR [sensitive, ls]	688	711	0.006
LRR [sensitive, ls]	712	735	0.38
LRR [sensitive, ls]	712	735	8.5

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPP5 [A. thaliana]	155	740	7e-12
I2 [L. esculentum]	190	668	4e-15
M [L. usitatissimum]	231	744	2e-11
L6 [L. usitatissimum]	234	728	3e-11
N [N. glutinosa]	234	725	2e-19
RPS2 [A. thaliana]	235	732	2e-13
Mla1 [Hordeum vulgare].	235	737	1e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	24	45

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5712.m00109

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)