Report for 5717.m00117

 > 5717.m00117, length: 1028, copies: 1 

MAAVNSSMGVMAPLLTKLAMLLSNKCKKLKGMRKNIEFLSHELTEMNAVLENLADMEKLDGQQKLWRNDIREMVY

DIEDCIDVFMYHLGDGNNKDGLLRKTARKLRNLRARYQIADKIQELKARVMQVAERRDRYANLGVSTSSIPKVVE

VDPRLPALYEDAKNLVGIDGPCMEITQWLMDEVENGSIQQLKVLSVVGFGGIGKTTLAKQVYNQLKKRFNFTSFV

SVSQNPDMVKLLRNLLSGTGFQGYGILDDHQKLIDTLRGHLANKRYLIVVDDIWNTQAWSIIRCAFAQNNHGSRV

IVTTRIEDVATKCCVDFHGMVYKMEPLNEFNSQKLFCKRIFDSDSIPEQYKNVSEDMLRKCKGVPLAIISIASLL

SSEGMNVGKWKKIHNFMGSESETNPTLEWMRHVLNLSYLDLSHNLKTCFLYLGIYPEDHTIFKADLIRLWIAEGF

IHEKPGLDLEETAESYFNELINRSMIKLDDYRSSEACHVHDLMLDLIISKCQEENFITIASKQPVKNVTKLPVRR

LCHQLSYGNLAMERMKLSQVRSYNTFPAFGCSMQPPISMFEHLRVLELRAYSTSVFLDLSAVSNLFLLRHLSIRG

FRLKLPQKIGRLQCLRTLDLLGSLLVTGFPSDVISLSSLCHLTVSGDAVLPNGIQKLVSLQTLLTFNSGGLPDIF

TIVEKISRFNSSAIRLAKTRRFNNGGLRSTNGGLRSPPASLEFPSFDDGWPTESILDYLSQHLDTPASSHSDLFS

PNLVACSPHILNFASLWLQQLIIRKNIRNVPSWLWFSLKLTMLELRVEELSCRDVQFLAGLPCLVDLDLTAQATP

ENIITKRVTTRLGRITHTDNFPKLQKFVLTCDLACLTFEPGAMPQLQILKLDDKKPSNLEEGHGTSGAAQHGKTP

LIGIEHLPRLEEVQVTSHSSKVPAYRDAVQRHPRSTLVNRVISSKNSTKEWKDKVRELAYDIEDCIDIFLHQLHP

REDKDRLVWKAVRKIKATMCLPAIKSPSKFKNSRHMSIYMIDVSTSGDRFIRI

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	150	456	1.1e-51
NB-ARC [Pfam ls]	150	456	1.8e-51

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	2	668	3e-42
Pi-ta [Oryza sativa]	3	652	1e-78
Mla1 [Hordeum vulgare].	9	870	1e-115
RPM1 [A. thaliana]	17	666	4e-52
Pib [Oryza sativa].	64	313	5e-14
RPS2 [A. thaliana]	110	634	2e-23
L6 [L. usitatissimum]	161	496	2e-11
M [L. usitatissimum]	161	411	2e-11
Pib [Oryza sativa].	161	642	4e-50
N [N. glutinosa]	163	630	1e-14
Xa1 [Oryza sativa]	175	666	2e-34

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	27	53

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5717.m00117

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)