Report for 5721.m00083

 > 5721.m00083, length: 616, copies: 1 

YFSDRVFFETISQSANLDTIKMKLWEQISGNLVLGAYNQIPEWQLKLGPRDKGPVLVILDDVWSLSQLEELIFKF

PGCKTLVVSRFKFPSLVTRTYEMELLDEEAALSVFCRAAFDQESVPRTADKKLVRQVAAECRGLPLALKVIGASL

RDQPPKIWLSAKNRLSRGETISDSHETKLLERMAASIECLSGKVRECFLDLGCFPEDKKIPLDVLINIWMEIHDL

DEPDAFAILVELSNKNLLTLVNDAQNKAGDLYSSYHDFSVTQHDVLRDLALHMSGRDALNNRRRLVMPRREESLP

KDWQRNKDTPFEAQIVSIHTGEMKESDWFQMSFPKAEVLILNFASSVYYLPPFIATMQNLKALVLINYGTISATL

DNLSAFTTLSDLRSLWLEKITLPPLPKTTIPLKNLRKISLVLCELTNSLRGSKVDLSMTFPRLSNLTIDHCIDLK

ELPSSICEISSLESISISNCHDLTELPYELGKLHCLSILRVYACPALWRLPPSVCSLKRLKYLDISQCVNLTDLP

EELGHLTSLEKIDMRECSRLRSLPRSSSSLKSLGHVVCDEETALLWREAEQVIPDLRVQDGGTIHSAILTCSVFM

QLTLQQQPKLAEKIEP

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	2	227	1e-07
NB-ARC [Pfam fs]	95	220	2.7e-17
LRR [Pfam ls]	461	484	0.41
LRR [Pfam ls]	509	532	0.006

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	437	460	1.9
LRR [sensitive, ls]	437	460	42
LRR [sensitive, ls]	461	484	0.018
LRR [sensitive, ls]	461	484	0.41
LRR [sensitive, ls]	485	508	1.9
LRR [sensitive, ls]	485	508	44
LRR [sensitive, ls]	509	532	0.00027
LRR [sensitive, ls]	509	532	0.006
LRR [sensitive, ls]	533	556	0.38
LRR [sensitive, ls]	533	556	8.5

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPP5 [A. thaliana]	8	561	4e-11
I2 [L. esculentum]	11	489	4e-15
M [L. usitatissimum]	52	565	2e-11
L6 [L. usitatissimum]	55	549	3e-11
N [N. glutinosa]	55	546	2e-19
RPS2 [A. thaliana]	56	553	2e-13
Mla1 [Hordeum vulgare].	56	558	1e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5721.m00083

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)