Report for 5725.m00196

 > 5725.m00196, length: 1124, copies: 1 

MVIGEAVLSAFMQALFDKVIAAAIGELKFPQDIAEELQKLSSSLSTIQAHVEDAEARQLKDRAARSWLAKLKDVA

YEMDDLLDEYAAETLQSELEGSSRSRHLSKVRSSFCCLWLNNCFSNHKIVQQIRKIEEKIDRLVKERQLIGPDMS

STMDREEIKERPKTSSLIDGSSVFGREEDKENIVKMLLTPNNSNHANVSVLPIVGMGGLGKTTLTQLVYNDPRVK

EYFQLRVWLCVSENFDEMKLTKETIESVASGFSSVTTNMNLLQEDLSKKLEGKRFLLVLDDVWNEDPEKWDRYRC

ALVSGSNGSRIVVTTRNKNVGKLMGGMTPYFLKQLSENDCWNLFRSYAFADGDSSLHPHLEIIGKEIVKKLKGLP

LAAKAIGSLLCTKDTEDDWKNVLRSEIWELPSDKNNILPALRLSYNHLPAILKRCFAFCSVFHKDYVFEKETLVQ

IWMALGFIQSPGRRTIEELGSSYFDELLSRSFFQHHKGGYVMHDAMHDLAQSVSMDECLRLDDPPNSSSTSRSSR

HLSFSCHNRSRTSFEDFLGFKRARTLLLLNGYKSRTSPIPSDLFLMLRYLHVLELNRRDITELPDSIGNLKMLRY

LNLSGTGITVLPSSIGRLFNLQTLKLKNCHVLECIPESITNLVNLRWLEARIDLITGIARIGNLTCLQQLEEFVV

HNDKGYKISELKTMMSIGGRICIKNLEAVDSAEEAGEALLSKKTRIRILDLVWSDRRHLTSEEANQEKEILEQLQ

PHCELRELTVKGFVGFYFPKWLSRLCHLQTIHLSDCTNCSILPALGELPLLKFLDIGGFPAIIQINQEFSGSDEV

KGFPSLKELVIEDMVNLQRWVSFQDGELLPSLTELEVIDCPQVTEFPPLPPTLVKLIISETGFTILPEVHVPNCQ

FSSSLACLQIHQCPNLISLQNGLLSQKLFSLQQLTITKCAELTHLPAEGFRSLTALKSLHIYDCEMLAPSEQHSL

LPPMLEDLRITSCSNLINPLLQELNELSSLIHLTITNCANFYSFPVKLPVTLQTLEIFQCSDMSYLPADLNEVSC

LTVMTILKCPLITCLSEHGLPESLKELYIKECPLITERCQEIGGEDWPKIAHVPVIEIDDDYFIPNRSIRRRLS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	156	463	4.9e-94
NB-ARC [Pfam ls]	156	463	1.3e-94
LRR [Pfam ls]	574	596	6.1
LRR [Pfam ls]	597	619	0.95
LRR [Pfam ls]	620	643	4.7
LRR [Pfam ls]	777	799	4.6
LRR [Pfam ls]	930	954	0.56

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	574	596	0.22
LRR [sensitive, ls]	574	596	6.1
LRR [sensitive, ls]	597	619	0.035
LRR [sensitive, ls]	597	619	0.95
LRR [sensitive, ls]	620	643	0.17
LRR [sensitive, ls]	620	643	4.7
LRR [sensitive, ls]	644	665	1.5
LRR [sensitive, ls]	644	665	42
LRR [sensitive, ls]	777	799	0.17
LRR [sensitive, ls]	777	799	4.6
LRR [sensitive, ls]	856	879	1.2
LRR [sensitive, ls]	856	879	33
LRR [sensitive, ls]	930	954	0.021
LRR [sensitive, ls]	930	954	0.56
LRR [sensitive, ls]	955	984	2.2
LRR [sensitive, ls]	955	984	60
LRR [sensitive, ls]	1004	1024	1.8
LRR [sensitive, ls]	1004	1024	48
LRR [sensitive, ls]	1026	1049	1.8
LRR [sensitive, ls]	1026	1049	47

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	1	1085	1e-153
RPS2 [A. thaliana]	13	872	3e-38
RPM1 [A. thaliana]	18	881	3e-61
Mla1 [Hordeum vulgare].	25	675	4e-47
Pib [Oryza sativa].	47	356	3e-13
Pi-ta [Oryza sativa]	61	670	5e-36
Xa1 [Oryza sativa]	123	1081	1e-107
Pib [Oryza sativa].	152	862	1e-45
M [L. usitatissimum]	163	503	6e-14
N [N. glutinosa]	198	881	2e-14
RPP5 [A. thaliana]	203	1059	7e-18
Xa1 [Oryza sativa]	572	1082	1e-14
Xa1 [Oryza sativa]	572	1010	3e-11
I2 [L. esculentum]	581	1112	3e-15

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5725.m00196

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)