Report for 5725.m00199

 > 5725.m00199, length: 1007, copies: 1 

MPIGEAVLSAFMQALFEKAVAAASSELKFPQNIAVELQNLSSSLSTILAHVEDAEERQLKDQAARSWLSRLKDVA

YEMDDLLDEHAAEVLRSKLAGPSNYHHLKVRICFCCIWLKNGLFNRDLVKQIMRIEGKIDRLIKDRHIVDPIMRF

NREEIRERPKTSSLIDDSSVYGREEDKEVIVNMLLTTNNSNHVNLSILPIVGMGGVGKTTLTQLVYNDVRVKKHF

QLRMWLCVSENFDEAKLTKETIESVASGLSSATTNMNLLQEDLSNKLKGKRFLLVLDDVWNEDPDRWDRYRCALV

AGAKGSKIMVTTRNENVGKLVGGLTPYYLKQLSYNDCWHLFRSYAFADGDSSAHPNLEMIGKEIVHKLKGLPLAA

RALGSLLCAKDNEDDWKNILESEIWELPSDKNNILPALRLSYNHLPPILKRCFAFCSVFHKDYVFEKDILVQIWM

AVGYIQPQGRRRMEEIGNNYFDELLSRSFFQKHKDGYVMHDAMHDLAQSVSIDECMRLDNLPNNSTTERNARHLS

FSCDNKSQTTFEAFRGFNRARSLLLLNGYKSKTSSIPSDLFLNLRYLHVLDLNRQEITELPESVGKLKMLRYLNL

SGTVVRKLPSSIARTELITGIARIGKLTCLQKLEEFVVHKDKGYKVSELKAMNKIGGHICIKNLESVSSAEEADE

ALLTLGQLPLLKVIIIGGFPTIIKIGDEFSGSSEVKGFPSLKELVFEDTPNLERWTSTQDGEFLPFLRELQVLDC

PKVTELPLLPSTLVELKISEAGFSVLPEVHAPRFLPSLTRLQIHKCPNLTSLQQGLLSQQLSALQQLTITNCPEL

IHPPTEGLRTLTALQSLHIYDCPRLATAEHRGLLPRMIEDLRITSCSNIINPLLDELNELFALKNLVIADCVSLN

TFPEKLPATLKKLEIFNCSNLASLPACLQEASCLKTMTILNCVSIKCLPAHGLPLSLEELYIKECPFLAERCQEN

SGEDWPKISHIAIIEIDDDSAMPDRSIRRRLC

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	153	460	2.5e-90
NB-ARC [Pfam ls]	153	460	7e-91
LRR [Pfam ls]	571	593	2.9

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	571	593	0.11
LRR [sensitive, ls]	571	593	2.9
LRR [sensitive, ls]	594	616	0.5
LRR [sensitive, ls]	594	616	14
LRR [sensitive, ls]	762	783	2.5
LRR [sensitive, ls]	762	783	69
LRR [sensitive, ls]	787	811	0.41
LRR [sensitive, ls]	787	811	11
LRR [sensitive, ls]	813	837	0.78
LRR [sensitive, ls]	813	837	21
LRR [sensitive, ls]	838	867	1.9
LRR [sensitive, ls]	838	867	52
LRR [sensitive, ls]	887	907	2.5
LRR [sensitive, ls]	887	907	66
LRR [sensitive, ls]	909	929	0.75
LRR [sensitive, ls]	909	929	20

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	1	966	1e-110
Mla1 [Hordeum vulgare].	7	618	7e-38
RPM1 [A. thaliana]	36	691	2e-55
Pib [Oryza sativa].	53	341	3e-11
Pi-ta [Oryza sativa]	61	612	1e-35
M [L. usitatissimum]	160	915	3e-14
Xa1 [Oryza sativa]	161	964	6e-86
Pib [Oryza sativa].	166	616	2e-38
RPS2 [A. thaliana]	169	843	7e-35
N [N. glutinosa]	197	925	4e-16
RPP5 [A. thaliana]	200	968	5e-11
Xa1 [Oryza sativa]	590	973	6e-16
I2 [L. esculentum]	737	992	8e-16

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5725.m00199

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)