Report for 5727.m00122

 > 5727.m00122, length: 1211, copies: 2 

MAEVALASLRLAASPILNKLLADASTYLGVDMASELRELETSIMPQFELLIEEAEKGNHRAKLDKWIRELKEALY

NAEDLLDEHEYDILKRKVKNGGEDPSPDLEHASSIGSIIKKPMRAASSSLSNLRPKNIKLVRQLKELKAILAKAR

DFREMLGLPAGSSVEGAQTGHTKTVVVTAATSTPPPKVFGRDADRDRIVDLLTQHKTCAEASRFVVSIVGPGGMG

KSTLAQYVYNDKTIQEHFDVTMWVCISRKLDVHRHTREIIESATKEKCQRVGNMDVLQYKLKEILQKKEKVLLVL

DDIWFDKSQDVEEWDLLLAPILSSQNGATKVLVTSRSKTLPPALFSEDVIDLENMKDTEFQALFKHHAFSGATIR

DLQMCGWFEEHAVKITERLGRSPLAAKVVGSNLKRVMNIDDWKGALTIKIDNLSEPKRALLWSYQKLDPCLQRCF

LYCSLFPKGYKYIIDELVHLWVAEGFIDARDTNKRMEDTGMDYFKEMVSGSFFQPFSERFDSTVYIMHDLLHDLA

ESLSREDCFRLEDDKVREIPCTVRHLSVRVESIIQHKPSVCKLQHLRTLICIDPLVDVGSNIFEQVVLNLKKLQV

LYLSFYNTRKLPESIGQLKHLRYLNIKKTLISELPKSLCDLYHLELLYLRPKSRLPDKLCNLCKLRHLQMYSDGL

ELSRIPDIGRLTLLQRIDSFHVLKQKGHELRQLRNMNEIGGYLSLRNLENVIGKDEALESKLYQKSRLEGLTLEW

NDANNMNPENCLHVEILEGLVPPPQLEHLSIRGYKSTTYPSWLLEGSQLENLESFALYNCSALERLPSNTKLFRR

CRELSLKNLPNMKELSFLPAGLTTLSIRRCPLLLFVTNDELEYHDHNALSSDHSSMKQLAALMDSDISKNLQTIE

RALEREDEVVMTKDVIKAWMRCHEQRMRLIYARRIGLPLVPPSGLSDLSLKSCTITDTALSICLGGLASLRCLSL

SKIMSLTTLPSEEVLKKLTKLDCLIIDACLFLGSLGGLRAATSLSHLRLNSCPALELAHGAEFMPASLKRLAISC

CVLAPDLFCGHWPHLKDIFIHDCRSSVSLFVGDLSSLKEFTLYHLPDLCVLEGLSSLQLHSVCLVDIPKLTAECV

SKFRVQDLLHVSSSAVLNNIISAEDLPSSLQRISIVDCPNISSLPDLPSSLQHIYIRDCPLLKESCRVPDGESWP

KIAHIRWKRID

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	171	482	4.2e-41
NB-ARC [Pfam fs]	186	482	2.2e-41
LRR [Pfam ls]	1154	1177	6.2

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	620	642	0.39
LRR [sensitive, ls]	620	642	11
LRR [sensitive, ls]	664	687	0.77
LRR [sensitive, ls]	664	687	21
LRR [sensitive, ls]	801	824	0.84
LRR [sensitive, ls]	801	824	23
LRR [sensitive, ls]	969	991	2.3
LRR [sensitive, ls]	969	991	62
LRR [sensitive, ls]	1018	1047	2
LRR [sensitive, ls]	1018	1047	55
LRR [sensitive, ls]	1086	1108	4
LRR [sensitive, ls]	1086	1108	110
LRR [sensitive, ls]	1154	1177	0.23
LRR [sensitive, ls]	1154	1177	6.2

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	31	807	8e-36
I2 [L. esculentum]	48	1211	2e-95
Pi-ta [Oryza sativa]	66	647	1e-26
Xa1 [Oryza sativa]	154	1107	2e-88
Pib [Oryza sativa].	174	653	2e-28
RPS2 [A. thaliana]	184	858	4e-23
RPM1 [A. thaliana]	190	845	9e-37
RPP5 [A. thaliana]	215	1195	2e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	53	80

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5727.m00122

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)