Report for 5735.m00197

 > 5735.m00197, length: 1504, copies: 1 

MGWGVACHTPPDTRAASGHVAVVLSITWPVTDRFFVIIDDIWDRKSWELIRCAVQDSKLGSRVVVTTRIFEIATH

RGEKEKKEMSSVVGKEVVDASSLITKGDMKDLLEDLLKMGMIGQRNVAGGSKLKLEVMPSELRLEGSKNYLSWCR

RAQLMLRAKGVDHFLQEGCEEPSDKESQAWRTWNTTNLTVMLLKHEEDIVIGNKWMQRRRVIHFLKGLNKEFEDR

RAAMFHQATLPTMEEVIFAMVQEMRLKLMRGTNLTRSAYTVADNRECYNCGQVGHVSYNCPTPRNIGGRGLIRGG

HGGFGGTRGGFGGDRGGFGGNRGGRGGDWRGRGGGRGRTEVLLRPMQPLRREKGLGGGLGLESGVMGCGTSIMRN

CKFRHWLHLSPPLSAWDGVRGVAASATGGTTVPVINPGRFRGGSSISGGRETEGGRSCSEPSVGGIGNGRGRGAF

SIAIMELVMGAMENLIPKLGELLKEEYVMQSGVREKIQSVSRELESIHAALRKIGKVPWEHLDDELRLWAHDLRE

ASYDMEDIIDSFLVRVDGHEASEVHWFKWFLEKMTNQFNKIKASHEIGVAMKEIDEKLQEVATRHARYTIDNIAI

NPAGPSTVDPRLLSMYKTLAELVGIEGPMDELMKMLDIDLPTKKRKIEIDVSVRKPKMVSIFGFGGLGKTTLAKA

VYDKLKPSFDSGAFIPVGQNPNIRKVFRDILMDLDKQSYNDLNLKLLDERQLINKLQEFLQKKRCFVVIDDIWDK

DSWRLIRCALQDSNHESRVVTTTRIYEVATQVGEVYKMHPLSHDESKKLLYTRIISGEGESLRSTSVEACDKILK

KCGGVPLAIIIIASLLANKPREYWSEVYNSIGLEHGYNDDVDNTRRILSLSYYDLPLHLKPCLLYLSIFPEDYYI

EKNLLIWKWIAEGFVHEKQAAKLGLFETGEGYFNELINRSMIQPVEHEYSGYMCGCRVHDMVLDLILLLSGEENF

VTVVDGSKEHELSWKNARRLALQHWSFEENRNQLANMGVKQTRSLIMTECFDKNMQLPSFQVLRVLEIQKQGRWW

NIDGKINLQHVRNLLHLRFLHLDCIDSIPLIEQFRNLRFLQVLHLKESNIQELPESVGLLTKLLSLRVDIDVRVS

PGVIEKLTSLQELYLWPYSDDTFQFVKVLGKLRELRVLHAKNLKLDGQGETSALLESLCNLHKIQTLDIDLNLNP

NEGVTWDAGFTSPQCLRYLCLVSLRFHRMPEWINWSLLPNLSYLELRVNFLEELDLETLGRLPKLRYLHLFIHCD

RIVSIGKIAGAGDACFQELRFLNTPYLYVRFDQHGIMCSKDEKAVMPNVKTLSFCVYVRILKDTDILGFDKLFSF

AHLGRSSLQQVQVNIQCRGARAMEVEEAEAALAHAAAIHPNRPTLQIHKFSEGEMLPPHEEPSSFFPKVVVENLN

AHERKDDDLRFVLGQMLQRNPCVKKFSVSINCENACLEEVEKAEAAARYAVDFHANRPTLELVKYGEDKMVLSGQ

HQQV

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	33	84	4.1e-08
NB-ARC [Pfam ls]	607	920	1.2e-54
NB-ARC [Pfam fs]	656	920	2.3e-56
LRR [Pfam ls]	1089	1111	2.4
LRR [Pfam ls]	1240	1263	2.3

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	1066	1088	2.9
LRR [sensitive, ls]	1066	1088	77
LRR [sensitive, ls]	1089	1111	0.092
LRR [sensitive, ls]	1089	1111	2.4
LRR [sensitive, ls]	1240	1263	0.086
LRR [sensitive, ls]	1240	1263	2.3

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	455	1397	1e-154
RPM1 [A. thaliana]	466	1271	2e-60
Pi-ta [Oryza sativa]	513	1220	4e-58
I2 [L. esculentum]	516	1279	2e-38
Xa1 [Oryza sativa]	560	1169	4e-29
L6 [L. usitatissimum]	621	1268	1e-10
M [L. usitatissimum]	621	894	1e-12
N [N. glutinosa]	632	901	4e-11
Pib [Oryza sativa].	657	1113	2e-49
RPS2 [A. thaliana]	658	1113	7e-15

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
Zinc knuckle	270	287	8e-07

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 5735.m00197

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)