Report for 5743.m00177

 > 5743.m00177, length: 687, copies: 1 

MPPMLHAILLLAVAVAATSASAATAPAAARNSTSNCTVPLPDAGIVTAAFKNVANFPLPRRPSCRPVRRLAYSSR

NLAGVVGWAALGNLSGLLTVDLSGNSLEGDDGFGGGALWRAPLLRAVDVSRNRLGGALRLGASARMASLNASRNG

FTSVVGVDGLAAGLVVLDVSGNRIAAVPEGLRRLTRVRRLDMSQNSMAGKFPDDLPPLDGVEFLDISDNNFSGVV

NSTWVTKFGRSAFLRAGNATSLVIEDNPPASAPAPAPATMTPSSGGKKHKRVVLIVVVVVCGVVAVSAAVAFMAL

AGCVACGFIRRRKRGKKAAAAWEDDEVAVGAVKVAATAPVVLVERPLMELTLADLAAATSGFGRESQLADVGGRS

GAAYRAVLPGDLHVVVRVVDGAVAGVGGDDGDVAAAAAGLRELARLRHPNILPLLGYCIAGKEKLLLYEYIEKGN

LYRWLHELPASSMDMEETGADMWDTTEQDKKSIDDWPTRYHIILGIARGLAFLHQGWAGSSGRPIVHGNLVPTNI

LLDDDLEPRISDYIHPVDSNNGELTPESDVYSFGVLVFELVTGQVRWDDSTVSWARGVIRNRKSLNIVDARLREE

EEEGGTSGAAKTTMTVAEREMVECLQVGFLCTAHSPEKRPSMQQVVGVLKDIRAGASSSRWRRRRDAMMETTMTV

HAREHAQFLHRG

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	163	185	0.2
Ser/Thr pkinase [Pfam ls]	365	646	2.4e-10
Ser/Thr pkinase [Pfam fs]	418	537	1.1e-10
Ser/Thr pkinase [Pfam fs]	550	568	0.0017

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	91	117	0.51
LRR [sensitive, ls]	91	117	11
LRR [sensitive, ls]	140	161	3.7
LRR [sensitive, ls]	140	161	77
LRR [sensitive, ls]	163	185	0.0098
LRR [sensitive, ls]	163	185	0.2
LRR [sensitive, ls]	186	209	0.98
LRR [sensitive, ls]	186	209	20
LRR [sensitive, ls]	210	234	1
LRR [sensitive, ls]	210	234	21

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	73	666	8e-25
Xa21 [O. sativa]	84	456	2e-11
Rpg1 [Hordeum vulgare]	279	646	2e-15
Pto [L. esculentum]	352	650	1e-17
Rpg1 [Hordeum vulgare]	373	652	9e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	5	27	out -> in
putative TM domain	278	300	in -> out

Report for 5743.m00177

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)